RNA id: AMCG00004848


Basic Information

Item Value
RNA id AMCG00004848
length 3167
RNA type mRNA
GC content 0.42
exon number 15
gene id AMCG00004848
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 5714950 ~ 5730640 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTTTAAACAGGCATTCGGAGACGCCTCCTCTCTGATGCGACATGTGAGACGGGAGGAAGAAGGCCCGAGTTTACGATTGAAGTCGGCGGTGGTAACGACAGTAAACTACATCCCATTTGGCATTTCGTAAGAATAAAGCTGGctaagagaattaaaaaataaagtacacacTAAAACATAGCATACACGGGTTTCGTACACAACCCCGTTGGTCTGAAATATAAAGTTGAGGTTTTTGCTCGGTATGTCACGGTTTAAAAGAGGTGGGAAATCTGTCGACTCTAGGGCTGGGTTTAAAAGTGATAAAGAGGAATCGCCTGTACCCTATGGCTTATTAAAAACGGCACGAAAAAGCGGACAGCTGAACCTGTCTGGACGAGGACTGACTGAAGTACCCCAAAGCGTGTGGCGATTGAATTTAGATACGCCTGAGGAAGCACAACAGAACCTCTCATTTGGAGGAGCGGATCGCTGGTGGGAACAAACTGATCTGACCAAGCTTCTCCTTTCATCAAACAAGCTGCAGGTTCTGTCGGAGGACATTCGGCTGTTGCCTGCTCTCATCTTTTTAGATGTCCATGACAATCAATTTACCTCCCTGCCCTCATCTATTGGAGAATTAGAAAATCTCCAGAAGCTTAATCTAAGCCACAATAAGCTGAAAGAGCTCCCGGAAGAGCTGTGGAATCTGAAGAACCTACGGAGCCTGCACCTCCAGCAGAATGAACTGGAACAGATCCCAGAAGGAGTGGGACGTCTTAGTAATCTGGATGATCTTGACCTCTCCAACAACCAGTTGACCACTATTCCAGAGAGCCTCGGCAACCTGAGAAGTCTAATCAAACTTAACTTGTCTTACAACAAACTGAAGTGCATTCCCCCAGGAATCCACTCCATGACAAGTTTGAAACTGTTAGACTGCACACACAACCAGTTGGAGAGTGTCCCTTCCAGCCTGGCCCAGATGGCCAGTTTAGAGCAACTCTACCTGAGACACAACAAACTCCGCTATCTTCCAGACTTCCCCTCCTGCAAGCTTCTCAAGGAGCTGCATGTTGGTTATAATCAGATTGAGGTGCTTGGACCAGAGCATCTTAAACACCTTAATTCTATTAGTGTGCTAGAGTTGAGAGACAATAAACTAAAAGCCTTGCCTGATGAAATTGCTCTGCTTGAAGGCCTGGAGAGACTGGAGCTCAGTAACAATGACATTAGCAGTCTGCCGTACGCTCTTGGTAACCTGCCCAAGCTGAAAATCTTGGCTCTGGAAGGAAACCCATTGAGGACTTTGCGCAGAGACCTTCTGACTAAAGGAACCCAGGAGCTTCTGAAATATTTAAGAAGTCGAGTTCAAGAACCAGATGGCCAATGTGGAGAGCGACACGAGACCGCTTTGACTCTTCCAAGTGAAGCCAAGATCAATGTGCATGCTATAAAGACACTGAAGACACTGGACTACAGTGAGAAACAGGAGGCATCAATCCCAGACGAATTGTTTGACACAGCTGTCGGTGATCCAGTTATCAGTGTGAACTTCAGTAAGAACCAGCTGGCTGCAGTCCCTGCCAGGCTTATAGAATTGAAGGCCACTGTTTCTGACATCAACCTGGGGTTCAATAAACTCACCGGCATCCCCCTGGAGTTCTGCATGTTACAGCAACTGGCACATATAGACCTCAGAAACAACCTTTTGACGTCCCTGCCTGCAGAACTGGAAGCCTTAGTAAAACTGAGGAGTATTATCTTGTCTTTTAACAGGTTTAAAACCTTCCCGGATGTGCTCTATCTGATCCCCACGCTGGAGACCATTCTAATCAGCAACAACCAGGTGGGAGTGATTGACCCGCATCAGCTGAAGCACCTGGAGAAGCTGTCCACGCTAGACCTGCAGAACAATGACATCATGCAGAGCGCTGATGCTCGATGGGAATCCATTCCGCAACCCAAGAGCAGCCATCGTTGCGAAAGGAACAGACGCGATACTTGAATATCTCCGAAGCAGAATTCCTGCCTAATCTACATGTTTCCCACCATTTCCAAATATTCTGGCATCCGAAACAAGCGGTATGATGATGTCGGAGAGCAGGTGGGGACGATACAAGCAGTAATGTTTCTCTACAGTCACTCAATGTATTAGTTAATTATCTGATAAATTGATGTGGATTATGCTCATTGTGTACAAAAGAACACAATGAGCATAATCCACAAGAAGGTCTAGCTTCTGGTCAAAGAAAATgacaggaaatgtttttatCTATGTGTATCAACGAATCTGTGTTGAAAATCACCTTGGATTAGACCCGTGTGAAATTATTGATcaaaaacagcttctgaaaTGAAGTCTTATGCAGTGTGTAATAGTTCTGTTTTACATTCCCATCTCTTTGGTATAACACTGAGCCTTACAAAAGATTTTATGTTGGAAAGAGTCAGTATTACGTTtataattgaatacaaaaacctcagaacaaaaaatgaatacaacgGGACATATAttctatatgtgtatgtatgtgtttgcacAAATAGACTCCCTTAAGGAGAAATACAAAGTGAACAAACAACTAAGAAACCTTACTTTTGTGTTATCTATCTGATGCTTGTAAGAACCCTCAATGAACTAGTTTACTTTTCTAACGTACTGGGTGAAAATGACTGACGGTCTAATTTATAACACTAACAGACTGAGACAAGggtctatttttgttttttgtggattttttaaataggtttagAAAATTGACATTGAAGCACATTTTTCTGCTGATTTACAATTCACTGCCACTTTTCTAGTTTTATCATTACTattttgtaatttcagttttttctatGTAATGAGGTTTGACATTCATTCTGTGGgccattttttatgttttcatatcaGAGATAAGATTTAAAactaatgaaacaaaaaggcTAGACCATATAGTTTGAAACTGAATGTACCACTTGTATCAAAGTAATACATGACTCCacttatattacattttgcaggTTTCACTACTGGTATCCGACTTTTCAAGCATGCAGTCTTTTGAgtattttgtgataattatcTGGAGTGATCAAATcataaaagtgtttaaaattaacatatAATGAAAGCACTGTGCAAATGTGTTTGTGCacttgaatttaaataattaaaagtttatCCATGGTTATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU180607 lncRNA downstream 312609 5327715 ~ 5402341 (-) True G143619
TU180521 lncRNA downstream 697319 5016847 ~ 5017631 (-) True G143544
TU180512 lncRNA downstream 729256 4985388 ~ 4985694 (-) True G143539
TU180501 lncRNA downstream 856804 4791690 ~ 4858146 (-) True G143528
TU180381 lncRNA downstream 1523669 4187958 ~ 4191281 (-) True G143430
TU180787 lncRNA upstream 857511 6588151 ~ 6588746 (-) True G143759
TU180799 lncRNA upstream 904080 6634720 ~ 6634963 (-) True G143771
TU180801 lncRNA upstream 904418 6635058 ~ 6635410 (-) True G143773
TU180810 lncRNA upstream 1065293 6795933 ~ 6796223 (-) True G143782
TU180876 lncRNA upstream 1875400 7606040 ~ 7666482 (-) False G143834
AMCG00004843 mRNA downstream 302149 5400208 ~ 5412801 (-) True AMCG00004843
AMCG00004844 mRNA downstream 317607 5382153 ~ 5397343 (-) True AMCG00004844
AMCG00004841 mRNA downstream 334442 5367664 ~ 5380508 (-) True AMCG00004841
AMCG00004840 mRNA downstream 355281 5345375 ~ 5359669 (-) True AMCG00004840
AMCG00004842 mRNA downstream 423597 5288818 ~ 5291353 (-) True AMCG00004842
AMCG00004853 mRNA upstream 179574 5910214 ~ 5914976 (-) True AMCG00004853
AMCG00004854 mRNA upstream 186126 5916766 ~ 5939825 (-) True AMCG00004854
AMCG00004861 mRNA upstream 516349 6246989 ~ 6341878 (-) True AMCG00004861
AMCG00004858 mRNA upstream 771848 6502488 ~ 6509316 (-) True AMCG00004858
AMCG00004860 mRNA upstream 809551 6540191 ~ 6559350 (-) True AMCG00004860
TU180357 other downstream 1598536 4113747 ~ 4116414 (-) False AMCG00004819
TU180096 other downstream 2514783 3138857 ~ 3200167 (-) False AMCG00004790
TU180095 other downstream 2554277 3138857 ~ 3160673 (-) False AMCG00004790
TU180047 other downstream 3004946 2709554 ~ 2710004 (-) True G143145
TU179730 other downstream 5068571 644004 ~ 646379 (-) True AMCG00004763
TU180667 other upstream 6169 5736809 ~ 5783184 (-) True G143659
TU181155 other upstream 2623349 8353989 ~ 8377001 (-) True G144050
TU181227 other upstream 3105720 8836360 ~ 8840988 (-) False AMCG00004894
TU181238 other upstream 3142245 8872885 ~ 8906594 (-) True G144115
TU182156 other upstream 6423485 12154125 ~ 12156378 (-) False AMCG00005011

Expression Profile