RNA id: AMCG00004853


Basic Information

Item Value
RNA id AMCG00004853
length 1218
RNA type mRNA
GC content 0.56
exon number 2
gene id AMCG00004853
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 5910214 ~ 5914976 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGATGCGACCATGTGTGCGGGTCCCCGTCCTGCGCAACCATGATCTCTACCGACTGCGACCCTGTTGTCCCCTGGCCCAACGCGTCGGAGGAGGCAATGTGGGAGCCCAACATCTCCCAGTCTAGGCGTGAAGCCAACGCGTCCCAGAATGCCGCTTGCAGGTCGGTGTCGGTGGTGTTCCCCATCACCATGATGATCACGGGCATGGTGGGCAACGCGTTGGCGCTCCTGCTGGTCTACAGCTCCTATCGGAAGAGGGAGAACAAGAGGAAGAAGTCGTTCTTGCTGTGCATAGGATCCCTGGCGTTGACCGACCTGGTTGGGCAACTCCTGACCAGCCCCATTGTGATCTCCGTGTACAGGGCCGATCTCAAGTGGGAGCGCATCGACGCCTCCGGGAACCTGTGCTCCTTCTTCGGGGTGTGCATGACCGTGTTCGGGCTCTGTCCACTCTTCCTGGCCAGTGCCATGGCTGTGGAAAGGGCGTTGGCCATCACCAGTCCCCACTGGTACTCCAACAATATGAAAACCAGTCTGACCAAACTGGCGTTGTGTGTGATCTGGGGCGGCGTGCTCCTGTTTGCTGTCCTGCCTCTGTTGGGAGTTGGGCATTACACCTTGCAGTGGCCGGGGACTTGGTGCTTCATCAGCACTGGGGACAGAAACATCTCCGGCAACGTTTTCTTTTCCACCACATTTGCGGTGCTGGGCATCTTATCCTTGCTGGTGACTTTCTCCTGCAATGTGGTGACCATCAAGTCCCTGGTGAGCCGCTGTAAGGCCAAGACAGCCTCGTCCCAGTCGGGCAGGCAGTGGGAGAGGCTGACGGCGGAGACGGTCATCCAGCTGATGGGCATCATGTGTGTGCTTTTCACCTGCTGGTCCCCTTTACTGGTCATGATGCTGAAAATGATCTCGACACACACCTCTTCCCACCAGTGCCAACCAGAAGCTGACAGGCTATTACCCAGTCGATATCCAGCAGAAATCCAGGTGGATTGCAATTTCTATCTCACCGCCATACGTCTGGCCTCCCTCAACCAGATTCTGGATCCTTGGGTTTACTTACTGTTGAGGGAAATACTTCTCCGGAAGTTCTGTCAGGTGGCCAATGCTGTCTCTAACTGCTCCATCGATGGACAGAAAGGGACTCAGAGTGCTGCTGATGGACTGAACAAGCAAAACATTGACGCCAGCCTCATACAAAAGCAGTGA

Function

GO: NA

KEGG:

id description
K04260 PTGER3; prostaglandin E receptor 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU180607 lncRNA downstream 507873 5327715 ~ 5402341 (-) True G143619
TU180521 lncRNA downstream 892583 5016847 ~ 5017631 (-) True G143544
TU180512 lncRNA downstream 924520 4985388 ~ 4985694 (-) True G143539
TU180501 lncRNA downstream 1052068 4791690 ~ 4858146 (-) True G143528
TU180381 lncRNA downstream 1718933 4187958 ~ 4191281 (-) True G143430
TU180787 lncRNA upstream 673175 6588151 ~ 6588746 (-) True G143759
TU180799 lncRNA upstream 719744 6634720 ~ 6634963 (-) True G143771
TU180801 lncRNA upstream 720082 6635058 ~ 6635410 (-) True G143773
TU180810 lncRNA upstream 880957 6795933 ~ 6796223 (-) True G143782
TU180876 lncRNA upstream 1691064 7606040 ~ 7666482 (-) False G143834
AMCG00004848 mRNA downstream 179574 5714950 ~ 5730640 (-) True AMCG00004848
AMCG00004843 mRNA downstream 497413 5400208 ~ 5412801 (-) True AMCG00004843
AMCG00004844 mRNA downstream 512871 5382153 ~ 5397343 (-) True AMCG00004844
AMCG00004841 mRNA downstream 529706 5367664 ~ 5380508 (-) True AMCG00004841
AMCG00004840 mRNA downstream 550545 5345375 ~ 5359669 (-) True AMCG00004840
AMCG00004854 mRNA upstream 1790 5916766 ~ 5939825 (-) True AMCG00004854
AMCG00004861 mRNA upstream 332013 6246989 ~ 6341878 (-) True AMCG00004861
AMCG00004858 mRNA upstream 587512 6502488 ~ 6509316 (-) True AMCG00004858
AMCG00004860 mRNA upstream 625215 6540191 ~ 6559350 (-) True AMCG00004860
AMCG00004859 mRNA upstream 649363 6564339 ~ 6580002 (-) True AMCG00004859
TU180667 other downstream 127030 5736809 ~ 5783184 (-) True G143659
TU180357 other downstream 1793800 4113747 ~ 4116414 (-) False AMCG00004819
TU180096 other downstream 2710047 3138857 ~ 3200167 (-) False AMCG00004790
TU180095 other downstream 2749541 3138857 ~ 3160673 (-) False AMCG00004790
TU180047 other downstream 3200210 2709554 ~ 2710004 (-) True G143145
TU181155 other upstream 2439013 8353989 ~ 8377001 (-) True G144050
TU181227 other upstream 2921384 8836360 ~ 8840988 (-) False AMCG00004894
TU181238 other upstream 2957909 8872885 ~ 8906594 (-) True G144115
TU182156 other upstream 6239149 12154125 ~ 12156378 (-) False AMCG00005011
TU182157 other upstream 6239149 12154125 ~ 12156378 (-) True AMCG00005011

Expression Profile