RNA id: AMCG00004854


Basic Information

Item Value
RNA id AMCG00004854
length 2091
RNA type mRNA
GC content 0.42
exon number 9
gene id AMCG00004854
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 5916766 ~ 5939825 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCCTACGAAAAAACTACTGAAGCTAAGATGATGAAAGCTGGGGGGACAGAAATTGGCAAGACTCTTGCTGAAAAGAGTCGAGGCCTCTTCAGTGCCAATGACTGGCAGTGCAAGACCTGCGGTAATGTGAACTGGGCCCGAAGGTCCGAGTGTAATATGTGCAACACTCCCAAATACGCAAAGCTGGAAGAAAGAACAGGATATGGAGGAGGatttaatgagagagagaatgtggaATATATTGAGCGTGAAGAATCTGATGGAGAATACGATGAGTTTGGccgtaaaaagaaaaaataccgTGGGAAGAGTGGCAGTGCTACGTCCCTCCTGAAGGACAACGAGAAGAAAGTGGTTGCAGAGGAGAATGACGAGGATGAGGAAGATGAAGATGAGGAGGGTGAGGAAGATGACGAAGGAGCTGATCTCTCCAAGTACGACCTGGACGCCAGTGACGAAGAAGCTGCAAAGCCAGTGGCTAAAAAGACCAGCGGCTCGGGCTCGTCCCGTTCACGCTCGTCCTCTCGCTCCTCTCGCTCCAGCTCGCGGTCCAGGTCCAGGTCCCGCTCACGAAGTTCCTCAAGCTCCAGATCAAGGACTCGCTCGAGCTCCCGAGATCGTGCGCGCTCACGCAGGTCGAGATCCAGATCCAGCTCCAGGTCTCGTAAGGGGTCTACGTCTCCGAGGAAAAGGTCTCGATCGAGCTCGTCTTCCTCCTCCCCTGAGAGAGCCAAGAAGAGGAGCCGCTCACGATCTTCCTCCTCTggcgagagaaaaaaaagacgTTCGAGGTCTCGATCGTCAGAAAGACGCCGCGGATCATCCTCTGGCTCCTCCCACTCCGGCTCCCAGTCGTCAAGTTCCAAAAAGAAATAAGTTCAAACAGGCGTTTTTAAAACCAGTAGATTTAAGACAAAGTGCATGGTGTGTTTTAAAGATACAAATGAGTTGTTGATGCTGTTTATTTCTCAACCGTCTGCCCTGGCGGTACGTGCTGACTATACTTTCCAGCCCCAGAAGTGGCATGTCTGTCCTCGCTCTTAGAAACCGCtgcttgttttcctgttttccgTACATGCAGTCATGTTTTAAGCCATAAGTTTCCTCCGGTTGTTTCTAAGGAACTTTATTCTTTCCCCGTTTTCACCGCCTCAAAAAATGCCCACCTCCTCCCTCATagtaaagcagtttaaaaatgagCATGCTGTTCCGTGTTGCCTACACGATGAGATCTGTTTCGCCTTTATATTTCCATAAGCAATAAGGAAGTTAATATCagactttttttaattggttgtaACCAGAATTCAAACTATCTGCTTAGTGAGTGTACAATACACTTCAAATCTCATGCAAATATAAGGCTGTATTCACCCAATTTTAGTTGTTTTGCAGCCTTATCATGCTTGTGGTGACTTGCATGCAAATTTTGCCCTCGTCATCATTAAAATACTTGCTTCAAATCTTAACCTGCAAGGattgttttgacatttcttttatttactgaattttgtttaattgacataatgtttgagtatttttaaggtaagtattttttttatttacttttgaattattGCTTCTATTGTTAGGtaactatatatacaaaaatactgtGAAGCTTTCTTTTGCAGTTGCACAACTATAAAACTCGGTAATTGAATGCAACAAcacattattatgtatattgtaatgaaattattgtattttgggaGTAGGTAGCAGGCCTCTATagttgtttaaatgcaaataaatggtAGTAGAATTGATATTGAACTAAGGAAGTCTGTGTTTTAAGaattggatatatatatatatatttttttttagcctGTAGTTAAGAGGAAAAAGCCAGAACACTTTCTGCGCAGaggttatttaattttgttcatgCCCCCTCGtccccttctttttttttaaactacagtattactgtattttgtgttcagACTACgctaattaaattacatatctaagcttttttttcctgaatgaCAGCAGTAACAAAATCAGGTTTAACTTTTTTCAGTTCATCAAAAAAAATGGcattgtaaacaaaatgtaaataaaatctgtcagcAACCTTGA

Function

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU180607 lncRNA downstream 514425 5327715 ~ 5402341 (-) True G143619
TU180521 lncRNA downstream 899135 5016847 ~ 5017631 (-) True G143544
TU180512 lncRNA downstream 931072 4985388 ~ 4985694 (-) True G143539
TU180501 lncRNA downstream 1058620 4791690 ~ 4858146 (-) True G143528
TU180381 lncRNA downstream 1725485 4187958 ~ 4191281 (-) True G143430
TU180787 lncRNA upstream 648326 6588151 ~ 6588746 (-) True G143759
TU180799 lncRNA upstream 694895 6634720 ~ 6634963 (-) True G143771
TU180801 lncRNA upstream 695233 6635058 ~ 6635410 (-) True G143773
TU180810 lncRNA upstream 856108 6795933 ~ 6796223 (-) True G143782
TU180876 lncRNA upstream 1666215 7606040 ~ 7666482 (-) False G143834
AMCG00004853 mRNA downstream 1790 5910214 ~ 5914976 (-) True AMCG00004853
AMCG00004848 mRNA downstream 186126 5714950 ~ 5730640 (-) True AMCG00004848
AMCG00004843 mRNA downstream 503965 5400208 ~ 5412801 (-) True AMCG00004843
AMCG00004844 mRNA downstream 519423 5382153 ~ 5397343 (-) True AMCG00004844
AMCG00004841 mRNA downstream 536258 5367664 ~ 5380508 (-) True AMCG00004841
AMCG00004861 mRNA upstream 307164 6246989 ~ 6341878 (-) True AMCG00004861
AMCG00004858 mRNA upstream 562663 6502488 ~ 6509316 (-) True AMCG00004858
AMCG00004860 mRNA upstream 600366 6540191 ~ 6559350 (-) True AMCG00004860
AMCG00004859 mRNA upstream 624514 6564339 ~ 6580002 (-) True AMCG00004859
AMCG00004857 mRNA upstream 650395 6590220 ~ 6609157 (-) True AMCG00004857
TU180667 other downstream 133582 5736809 ~ 5783184 (-) True G143659
TU180357 other downstream 1800352 4113747 ~ 4116414 (-) False AMCG00004819
TU180096 other downstream 2716599 3138857 ~ 3200167 (-) False AMCG00004790
TU180095 other downstream 2756093 3138857 ~ 3160673 (-) False AMCG00004790
TU180047 other downstream 3206762 2709554 ~ 2710004 (-) True G143145
TU181155 other upstream 2414164 8353989 ~ 8377001 (-) True G144050
TU181227 other upstream 2896535 8836360 ~ 8840988 (-) False AMCG00004894
TU181238 other upstream 2933060 8872885 ~ 8906594 (-) True G144115
TU182156 other upstream 6214300 12154125 ~ 12156378 (-) False AMCG00005011
TU182157 other upstream 6214300 12154125 ~ 12156378 (-) True AMCG00005011

Expression Profile