RNA id: AMCG00004858


Basic Information

Item Value
RNA id AMCG00004858
length 1686
RNA type mRNA
GC content 0.49
exon number 10
gene id AMCG00004858
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 6502488 ~ 6509316 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgaagaagcgGAAGGAGCTCAACGCGTTAATCGGGCTCGGCGGGGAGAGCAAGAGGAAGAAGACCAAGAAGGGCTCGGGACACCGGCTCCTGCGCACCGAGCCGCCCGATTCGGACTCCGAGTCCAGTTCGGAGGATGACGAGTTCGGCCACCTGAGCGCCGCCTCCGCGCTGGGGAAGAGAACATATGCACAGTGCTGCAACATCTGCTACCCTTTGTGTGCATTCATCATCCTGGCTGCTTGCGTGGTGGCCTGCGCTGGTTTAATATGGATGCAGATCGCCCTGAAGGAAGATCTAGATGCTCTGAAGGAAAAGCTGCGTACAATGGAGTCCAGCCAAAAAGTATCAGCCCACGAGATCCCCAAACTCAGCGAGGACTTACTAGACAAACAGAAGAAgcttgaaaatattgaaaatggaGATAAGGGGCTGAGTAAAGTGTGGTCaaacataacagaaataaacaaaaagATCAGTTTGCTTGATTCTGCTGTCAGCCACCTGAAAGCAAACATAAAATCGGCTTCTGATTTGATCAATCTTCCCACCACAGTTGAAGAGCTTCAAAAGAGTGTTGCCACAATCGGGAGCACGTTAACAAGTGTGCAGCATGACGTTGAGACAATGCAGACCGCGCTCGACGAGCAGAAGAAAACGGTGATTGCAGTTAGAAAAAACATGgaTGAGAAACAGGATCGtgaaagtaaagaaacaaacaaatcgtCTTCTCCCACTTCCACAGAACAACCACCAGCCGATAACCGGACATCATGTTTAATACTCAAACAGGAAATGCTGTATCTCCAAGATGCGATTAGTGAGCTGAACGCCACCCAGGTGCTTTACCAATCGCACAACGACGAGCAGGTGCACAGCATGAACGCAACCATTGGCGGCCTCAAGCAGAGGATGTTTTCACTGGAAAATGAGTTCCTCAGCTTTAACGTTACACGAGCCCCTCGGCACAACATGAGTACAATGGACTCTCGAACCGAGGAGCTGAGAGAAAAGCTTCAGTTGATCAATGCCCTGACTAGTAAACCACAGAGCGAGGTGCATCCAGGGGAAACGGATCAGGAACCAGAACTGAAGCCGGCCTCTGGTGAACCTGGACCTGCAGGAATAAATCCAGAGCACGTCTTGGCCAGTTCTGAGATAACACCAGACCAAGGACTGCCTCCAGATAGTGCCAAAGCCCCCGACGGCGACCACTTTAAGGACCATAGAGAAACAGACAATCAACACCTCAATGGAAGCGAAACGCCACCAGACACTGACCGCATCAGTGACAGTAATGTGGAAAAAACGGTCAAAGGCTTTCCAGCTGCCCAGGAAATCTTTCCACCAGAAGttgttaaaaaaactgaaactggaaaatcacctcttccttctataAAGGATGGCTCTTCACAGACCTCAAATTCTACCAGACTTCCAAGATTTCTATCACATGTTCTCTCCAATAAAGAAACGGGAAGACCCTTATCCTTGCCAGGAATCGGAAGTTTAAAAGATCTACAGGAGTTCTTCCTTGGATTGGGAGAAGGTTCTTCTGAAGGGCTCTCTTACGATGAACTGAAGAAGCATTTTGGATTTTCAACGCCTGACATTCGTGAACTGGAGAGTTACGATGTTGACAAAAATCAGAAATACTCGCAGGCTGAGCTCCAGGCTGCCACAGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU180607 lncRNA downstream 1100147 5327715 ~ 5402341 (-) True G143619
TU180521 lncRNA downstream 1484857 5016847 ~ 5017631 (-) True G143544
TU180512 lncRNA downstream 1516794 4985388 ~ 4985694 (-) True G143539
TU180501 lncRNA downstream 1644342 4791690 ~ 4858146 (-) True G143528
TU180381 lncRNA downstream 2311207 4187958 ~ 4191281 (-) True G143430
TU180787 lncRNA upstream 78835 6588151 ~ 6588746 (-) True G143759
TU180799 lncRNA upstream 125404 6634720 ~ 6634963 (-) True G143771
TU180801 lncRNA upstream 125742 6635058 ~ 6635410 (-) True G143773
TU180810 lncRNA upstream 286617 6795933 ~ 6796223 (-) True G143782
TU180876 lncRNA upstream 1096724 7606040 ~ 7666482 (-) False G143834
AMCG00004861 mRNA downstream 160610 6246989 ~ 6341878 (-) True AMCG00004861
AMCG00004854 mRNA downstream 562663 5916766 ~ 5939825 (-) True AMCG00004854
AMCG00004853 mRNA downstream 587512 5910214 ~ 5914976 (-) True AMCG00004853
AMCG00004848 mRNA downstream 771848 5714950 ~ 5730640 (-) True AMCG00004848
AMCG00004843 mRNA downstream 1089687 5400208 ~ 5412801 (-) True AMCG00004843
AMCG00004860 mRNA upstream 30875 6540191 ~ 6559350 (-) True AMCG00004860
AMCG00004859 mRNA upstream 55023 6564339 ~ 6580002 (-) True AMCG00004859
AMCG00004857 mRNA upstream 80904 6590220 ~ 6609157 (-) True AMCG00004857
AMCG00004866 mRNA upstream 1027414 7536730 ~ 7562285 (-) True AMCG00004866
AMCG00004865 mRNA upstream 1063875 7573191 ~ 7582511 (-) True AMCG00004865
TU180667 other downstream 719304 5736809 ~ 5783184 (-) True G143659
TU180357 other downstream 2386074 4113747 ~ 4116414 (-) False AMCG00004819
TU180096 other downstream 3302321 3138857 ~ 3200167 (-) False AMCG00004790
TU180095 other downstream 3341815 3138857 ~ 3160673 (-) False AMCG00004790
TU180047 other downstream 3792484 2709554 ~ 2710004 (-) True G143145
TU181155 other upstream 1844673 8353989 ~ 8377001 (-) True G144050
TU181227 other upstream 2327044 8836360 ~ 8840988 (-) False AMCG00004894
TU181238 other upstream 2363569 8872885 ~ 8906594 (-) True G144115
TU182156 other upstream 5644809 12154125 ~ 12156378 (-) False AMCG00005011
TU182157 other upstream 5644809 12154125 ~ 12156378 (-) True AMCG00005011

Expression Profile