RNA id: AMCG00004859


Basic Information

Item Value
RNA id AMCG00004859
length 4707
RNA type mRNA
GC content 0.41
exon number 30
gene id AMCG00004859
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 6564339 ~ 6580002 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CACTGACTGAAGCCATCATGAAGTGGTTTCTATTGTTAGTGTGGTTATCTTCAGTGGgctGTGACACAATCAATCTTGagcccagatTCAGCTTCAAAAAAACCTATGAATACAAGTATGAAGGAATTATAAAGATTAGGCACACTGAAAGGAACTTGGTGGAATCAGGCCTGAAAATTACATGTGGACTGGAAATCAATGCAATCGGGAAGGATCTGTTCCTTCTCAAGGTTAAAAATCTGGTCTTCCAAGAATATAATGGTCTCCCTGGGAAGAGCGCATTTTATGCTTCGCCAAAGCTAACCCAGAAACTGGCAACCCAACTCACACAACCCATGAAGTTTGAATACAGTAGAGGCCGCATTGGTGACATATTTGCAGTGTCCGACGTCTCTGACGCAGCCATCAACATCGTGAGAGGGATTCTCAGTGTCCTGGATATCACCGCCAAGAACAACGCACCTATCTATGAAATGTATGAGAATGGAATTCATGGAAAATGCTATACCTACTATACCAtcctgaaagacaaaaaaacagacaatatCAACATCACTCGATCTACAGACTTAAACAACTGCCTGCACAAGGTAGAAAAGTACCTGGGGATGGCTCATGCCCAAGactgcaaacattttaaagagAGTGGCTCAAATCGTAAAGACGTTATCAGATACAGCTATGCCCTGAAGGCTGCTGAAGATGGTTCTGtgataacaaatgcagatgtacAAGAGATTCAGCAGTTCACACCATTCAGTGTGAAAGATGGGGCTTCTATACTGGAGGCAACaaaaatgcTTGCACTGTTGAGTGTGAAGGACAACCAGGAGAAACCACCTACTATCTTACTGGCAAACAGAGGGAGCTTGACGTACGCATTCGGagtcaaattaaatcagttccCAACAATGATCACGAAATTAGAGAACCCAGTGGATGAGCGTTTGGTGATGGCAAACACCAAACAGATTGATGTTAACTCTACCACAGATGTCCTCAGACTATACCAAATGCTAAATCTGGCCACGATTGAAAACCTTGAGTCTCtatggaaaatattttctgGAGACCAAAACAAGagGAGGTGGCTTTTGGACTCCATCCAGGCAATTTCAGACACTAAGGTTATCATATTCATAAAAAAGAGAATTCAGAATCAGGATATTACATGGGGTGAAGCCAGCCAAGTATTGATGGTAGTACTCAATAAAATGACAGCTGATCACGAAGCTGTAGAACAATCTAAGGAATTTCTGAGAATCCCATTTATAAAGGATCAGATAGTCCTTTGGAGGACAGTGATGCTTGGTTATGGATCACTGGTTTACAGGTACTGCTCTTATTTTGAGGATTGTCCTGAAGATGTTCTTGagCCTCTCCATGAGTTTGCCAATAACGCACTCAATGAAGCCAATCAAGCGAACATGGTTCTGGCACTGAAGGCCATAGGGAATGCAGGACAGCCCTCTAGCATTAAGACCATCAAGAAATTCTTGCCTGGATATGACGAGAAGGCTACAAAGCTTCCTCTCTTACTTCAACATAATGCTGTGTTGGCTCTGAGGAACATTGCTGTTAAAGACCCCAGGAGAGTTCAAGACATAGCATTGAGAATCTTTATGGATGATGATCATCAAGCTGAAGTCCGGATCTATGcttgtttaattctgtttgaAACAAGTCCTTCTATGGCTCTTGTTTCAACAATATCAGCATATCTCCTAAAGGAGAAGAACCTACAAGTGGCCAGTTTCTGTTATTCACAGATTTATGCTATTTCAAGATCCACCACCCCTGATAACAAGGAAGCgtcaATTGCTTGCAGTGTAGCTGTCAAGATTCTGAAGCCCAAATTTGATCACCTTAGCTATCGTTACAGCAAAGCTTTCCACTTCGATATGTTTAATGAACGCATTTTGACTGGAATGTCTGCTGACCTTTATATGGTTAATAATCCTGGCAATTATCTACCAACTGCTCTTATTACCCGATTCAAAGCCTATTCTATTTGGAAGAAAATACAGCCAATTGAGttGGCTGAATGGAgtacatttccaaaagataaACCTCTTGCCTCTGGCTATGTGAAAATCTTGGGTCAGGAGGTCTTTTTCGGAAGCATCAACAAAAATATGATTGAGACAATGGCTACAATGGCAGGAAAAAATGGCAAAGCATTTACAACAATTGCAGATCTTCAACGTGGAATGGCATTTGATTGGACATCGCCATTTTTAGTTGCTGAAACCCGATACATACAACCCACCTGCCTTGGGCTTCCAGCTGAAATTAGCAAGAGCTACTTTTCTATTTTGGGTATAAAAGTTAATGcaaaagcaaaattaaaccCAGCCCCAACAGATAACTTAACCGAGTTGATAAAAGCAGACATTGAACTTCAGGTGGATGGCGCTATAAGGGTCGTCAAAGATTTGTATTGTTATCATGGAATTAATACAGAATGGTTACAGTCTGGAGCTGAATTGTATTCAAAAGCTACAACCGTTTTGCCACTGAACTTTAAACTGAAGATGAATATGCAGAAAAGGAAAATTGAGATTGATACTCCCCCATGtcagaaggaaaatgaaatattttatgtCGGCACTGAACTTTTTGCTGTCTCAAGAAATATTGAAGACGTCTCTGAAAAAAAGACTCCCATGATGCCTTTGAATGAGGTTTTTGAAGAAATACCCTCTAACAAACCTGCAAAGTTTCAAAGCACTTCATCCAAAGATGagaaatcatcatcatcatactgGAGAGGGTATACAAAGATATACCAAGAAGACACCAACATCTGTGTTGCAGCAAACAACTTTGGGATGGAAGTCTGTATGGAAACAAATGCAAGATCTGCACACAATGTCAATAACTGCTTCCTTTATTACCTAACAGGAAGCacttacattaaaattaaactcaaaccagGACATCGCGATGCAGGCAGCTCTTCATCcgagtccagctcctccagttCCTCCGCAAGAGGGAAGAGACGAGGCTCGGGAAGACCAGCGTGGAGCAGCAGCAAGGTCCTGAGCGTTGGCAGGAACAGCAGTGAGTCCTCCAGCTCATCCTCACAGTCACAGtCCAGATTTGCTGAAAATAGTACAAAGCCTGCTGTTACTTTCAAAGCTGttgcagaggggaaaaaaacacggGGCTACGAAGGAGCTATATATTACGTGAGGAAAAGCATTCAACTTTTGATCTCTGAGGTTACTGATGGAAGCAAATGGAAGATGTGCACAGATACTGAGCTGGATATGCAGTCCTGGAGAACAATGATGCAGGTCAGATGGGGAAACGATTGTACACAATACAAGATGGCTGTTCAGACTGCAATTGATTACAACACTCACAAGGAATTTCTAATTAATTCTATATTGCAATGGGAGGATGTACCAGAGTATATGAAACAAACTGGAACAAGCATTAATGATTACATCCCTGGAATGGCTTTTCTGCTGGGTttttatcaaaagcaaaaccaaaatcCCACATCTCAAGTTTCTGTTACACTTGTAGAAGTATCATctacaaatatgaatattatgatGAACACTCCTGAGcgaACAGTGTACCAATATGATATCCCATTACCATTCCAAATTCCTTATCTAAACAGTAATACTCCACAAATTCAAATGATTCGAGACATGCAGGGATTGAAAGACGAGTGCTCGGTTGAAGGAAATAACTTCAAAACTTTTAATGACATCAAGTTCACCTCTCCAATGCCCAAAGCATGTTACCATGTGTTAGCTCAAGACTGCACAAGTGACATGAAGTTCCTGGTTATGATGAAACAAGAGGCTTCCAGTAAGAAAGAAATTCACATCAGAACACCTTCTGGATCTCTGTACATGTACCGTAAAGATGCAGGAGACTTTGTCCTCACGCTGAACAATTCGTCAGTGCTGATGTCTGCCTTGCCATTAAAAGACGTATCAGGAGAACTGCTTATCAGCAAACTTGGAGACAGTGTCCTTCTACAAGCACCAACATTTGGACTTGACAGCTTACATTTCGATGGAGAGGCAGTGAAGCGCCAGCCAGTGAAGCTGGACAGAGAAGTCAACTTGCTTGGAACAAAGTCCAAATGTTATTCAGTTCAGCCCGTGCTGCGCTGCAGACCTGGGTGCTCAGCAGAAGTCACCATCCCCGTCTCTGTCGGATTCCACTGCGTTCCTCTTGATACCAGTGTGAGTGAGAAGGACGTCCAGACCATGTTTGATCAGAAGGCTGAGCATGTGGAAGGAACCATGGAGGCCCACACTGCTTGCTCTTGCAGTGGTGCTGAATGTCCTTAGGCCTCCAATGATCTTGGGATTGTTACCTATACTCTACAAGATATTAAAAAGTGTattggggaaaaatatataaattaatgagcattaataaaacaaactatcGTATCTCACTTGTTGACAGTGTTTTTCTCCAAAAGTGATACATTCTATGAGTATTATTTGCCTTAAAAACCTCAGACCAAGCAAGCAATCTGTcgtatttttggggggtttgtggGATATGCCAAGGTAATTTTCCCTTTGAGAGAGGTGGAGTAAAAAGGAATTCCTAACACTATGGATAACTTGATAACTTGCTGCTAACAGTAAGCATGGGCACAATTCCTTTTTGAACACACGTGTACAGTATGAATTGCATTgacattgaattaaatatatcaaaaga

Function

GO:

id name namespace
GO:0071391 cellular response to estrogen stimulus biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU180607 lncRNA downstream 1161998 5327715 ~ 5402341 (-) True G143619
TU180521 lncRNA downstream 1546708 5016847 ~ 5017631 (-) True G143544
TU180512 lncRNA downstream 1578645 4985388 ~ 4985694 (-) True G143539
TU180501 lncRNA downstream 1706193 4791690 ~ 4858146 (-) True G143528
TU180381 lncRNA downstream 2373058 4187958 ~ 4191281 (-) True G143430
TU180787 lncRNA upstream 8149 6588151 ~ 6588746 (-) True G143759
TU180799 lncRNA upstream 54718 6634720 ~ 6634963 (-) True G143771
TU180801 lncRNA upstream 55056 6635058 ~ 6635410 (-) True G143773
TU180810 lncRNA upstream 215931 6795933 ~ 6796223 (-) True G143782
TU180876 lncRNA upstream 1026038 7606040 ~ 7666482 (-) False G143834
AMCG00004860 mRNA downstream 4989 6540191 ~ 6559350 (-) True AMCG00004860
AMCG00004858 mRNA downstream 55023 6502488 ~ 6509316 (-) True AMCG00004858
AMCG00004861 mRNA downstream 222461 6246989 ~ 6341878 (-) True AMCG00004861
AMCG00004854 mRNA downstream 624514 5916766 ~ 5939825 (-) True AMCG00004854
AMCG00004853 mRNA downstream 649363 5910214 ~ 5914976 (-) True AMCG00004853
AMCG00004857 mRNA upstream 10218 6590220 ~ 6609157 (-) True AMCG00004857
AMCG00004866 mRNA upstream 956728 7536730 ~ 7562285 (-) True AMCG00004866
AMCG00004865 mRNA upstream 993189 7573191 ~ 7582511 (-) True AMCG00004865
AMCG00004875 mRNA upstream 1034351 7614353 ~ 7616498 (-) True AMCG00004875
AMCG00004872 mRNA upstream 1109024 7689026 ~ 7699315 (-) True AMCG00004872
TU180667 other downstream 781155 5736809 ~ 5783184 (-) True G143659
TU180357 other downstream 2447925 4113747 ~ 4116414 (-) False AMCG00004819
TU180096 other downstream 3364172 3138857 ~ 3200167 (-) False AMCG00004790
TU180095 other downstream 3403666 3138857 ~ 3160673 (-) False AMCG00004790
TU180047 other downstream 3854335 2709554 ~ 2710004 (-) True G143145
TU181155 other upstream 1773987 8353989 ~ 8377001 (-) True G144050
TU181227 other upstream 2256358 8836360 ~ 8840988 (-) False AMCG00004894
TU181238 other upstream 2292883 8872885 ~ 8906594 (-) True G144115
TU182156 other upstream 5574123 12154125 ~ 12156378 (-) False AMCG00005011
TU182157 other upstream 5574123 12154125 ~ 12156378 (-) True AMCG00005011

Expression Profile