RNA id: AMCG00004861


Basic Information

Item Value
RNA id AMCG00004861
length 945
RNA type mRNA
GC content 0.53
exon number 8
gene id AMCG00004861
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 6246989 ~ 6341878 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACCACTTATTGGGGAGGTCTGGGTACGGCGAAGCGGCGCTGGGTACCCTACACCGCAGGCCCCGGGTCCCATGCCCTGTGTTCCCCTCACCTGGGCAGCCATCTACTCCTCCCTCGTTGTACCCTAGAAGAGTCCCTGACATCAGAGCCGAGAGAGCAGCCAGAGGGACTTTTAGAGGGGAGCTTTGTGAGAAGGTACCTGCCACCCCAAGCAGATGTGAGTATCAGACAGCAGTACCTGGAGCGCCAGTGGGGGAAAGGTGAGGGCAGGCGGTGGAAGAGTGCATGCACGACGGACTGTGCTGCTGACCATCGCCGGAGGTTATGTGCAGTTACATCCGTGAATACATCCGTTATTGAGTTCCTCCGAGAGCGGGGAGTGCCAGAGGAAGCTAATGTTAACAAATGTGACCACATGGACATCATAAAACCATGCATTGCAGTGGACTATGAAGAACTGAAAAGGCTCTATGATGACCTCCATCCAACATCAAAGAAGGTGTTGAGGCTGTTGGCGTTCACAGCTGAgatgacaggaaaacaaaaagaagtgGAGAATCACCTGAGAAACCTGGCCTGCGCTGCCCGCTCACTGCACTGCGGGACTCCAGAGCCCAGAGATCCGCCCCAGCGGGCAACCATGTCTCAGGTCATGCTAGTGGAGGTCGACCTGGACAAAACATCACCTGCGTTGAGAAACGGAGGGAAGAGCTGGAATAAGAGCTTTGTAAAGGTTTGCAAACAAAACGAGGAAAGCAATCTAGCAGTGATGGACATAATGATCGTGGTGCAGGATGCATGTTGCTCTGGAAGTGGAGCTGGTCAGGTCACGGAATTCGGTGTGATTCCTCCCAGGGGCTTATGGGAGATAGCAGTAGAGAATGCTCACGGATGGTGCAATGAGATTTATTTCGGAATTGAAATCCACTCCCATGGCATATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU180607 lncRNA downstream 844648 5327715 ~ 5402341 (-) True G143619
TU180521 lncRNA downstream 1229358 5016847 ~ 5017631 (-) True G143544
TU180512 lncRNA downstream 1261295 4985388 ~ 4985694 (-) True G143539
TU180501 lncRNA downstream 1388843 4791690 ~ 4858146 (-) True G143528
TU180381 lncRNA downstream 2055708 4187958 ~ 4191281 (-) True G143430
TU180787 lncRNA upstream 246273 6588151 ~ 6588746 (-) True G143759
TU180799 lncRNA upstream 292842 6634720 ~ 6634963 (-) True G143771
TU180801 lncRNA upstream 293180 6635058 ~ 6635410 (-) True G143773
TU180810 lncRNA upstream 454055 6795933 ~ 6796223 (-) True G143782
TU180876 lncRNA upstream 1264162 7606040 ~ 7666482 (-) False G143834
AMCG00004854 mRNA downstream 307164 5916766 ~ 5939825 (-) True AMCG00004854
AMCG00004853 mRNA downstream 332013 5910214 ~ 5914976 (-) True AMCG00004853
AMCG00004848 mRNA downstream 516349 5714950 ~ 5730640 (-) True AMCG00004848
AMCG00004843 mRNA downstream 834188 5400208 ~ 5412801 (-) True AMCG00004843
AMCG00004844 mRNA downstream 849646 5382153 ~ 5397343 (-) True AMCG00004844
AMCG00004858 mRNA upstream 160610 6502488 ~ 6509316 (-) True AMCG00004858
AMCG00004860 mRNA upstream 198313 6540191 ~ 6559350 (-) True AMCG00004860
AMCG00004859 mRNA upstream 222461 6564339 ~ 6580002 (-) True AMCG00004859
AMCG00004857 mRNA upstream 248342 6590220 ~ 6609157 (-) True AMCG00004857
AMCG00004866 mRNA upstream 1194852 7536730 ~ 7562285 (-) True AMCG00004866
TU180667 other downstream 463805 5736809 ~ 5783184 (-) True G143659
TU180357 other downstream 2130575 4113747 ~ 4116414 (-) False AMCG00004819
TU180096 other downstream 3046822 3138857 ~ 3200167 (-) False AMCG00004790
TU180095 other downstream 3086316 3138857 ~ 3160673 (-) False AMCG00004790
TU180047 other downstream 3536985 2709554 ~ 2710004 (-) True G143145
TU181155 other upstream 2012111 8353989 ~ 8377001 (-) True G144050
TU181227 other upstream 2494482 8836360 ~ 8840988 (-) False AMCG00004894
TU181238 other upstream 2531007 8872885 ~ 8906594 (-) True G144115
TU182156 other upstream 5812247 12154125 ~ 12156378 (-) False AMCG00005011
TU182157 other upstream 5812247 12154125 ~ 12156378 (-) True AMCG00005011

Expression Profile