RNA id: AMCG00004882


Basic Information

Item Value
RNA id AMCG00004882
length 3001
RNA type mRNA
GC content 0.49
exon number 22
gene id AMCG00004882
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 7907176 ~ 7936127 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCGCCAGCTGTCTGTCAAGAGCAAGCTTCCGTAACCCCTAACAACCGCAGCGACGCCGGAAAGCAGTTCTGAGAGGCGAGAGCCGTGAACGGACACAGACACGGAGTTATCACTCGCGTCCGCCGGGTTTTTAAAAACGACGCTGAAGAGgCCAGGACAATTTCTgatactgaaacaaaatggcTGACAAGGGGAGTCTGAAAAAAGCAAAGGCTCCAGTAGCCAGTCCCAAAGGCAGTGCAAAGAGACCTAAAAGCACTGCAAGCACTGCAAGCAGTAAAACAGGAGGAAAACCAAAACCTGGTTCAGTTAAGAGAGAGGAGATCGCTTCAGCCACTGGAAGTGTTGGGGAGTTGGGCCCACCTCAGGACATTTTCCCTCTGGTTCTGACCTCCGCAACCCAAGAGCTGTTTGAGTGTCGTGCAGATGAGGATGTCACTCAGGAGAAGCCCTTCAAGATGCTCAGAAAGGAAGAAGTCCTCCAGGACATGAAGACACGAGCAGCTGTGTCTGATTTCCACCCCTTTAAGAAGCTGGTCCTGGCCTATCCTGGGGAGGAGCTCTTGCTAGTGTATGATAGAGACTTCAAATATGGCCAGAGCTTCTATCTCGTTGGAACAGAAGAAACCAAAGAAAGGATTTTGAATCCTCCAGAACGCATGGAGGAAGAGGCTGAGGAGGACGACATGTTCCTGGTCTACAAGACGCCGGAACCTCAGACATGGGTGTCCCTGGGCAGTGAGCTAGAAATCGAAGAGGAATCGGTGAAGGATTCTAGAAGCAAGTTGAGTTACAGGATCTCCAGGGTCCGCCGCGAGTTTGGAGCTCCAGTACAGTTCAGTGATCGCAATGCTTCAGTGGCGAAGGATGGCTACGTGGAATGCACCCCCTACCAGGACAAGAGCTTCAGTATTAAACAGCTGGAGAGGGACACTGGGACACAGGCTGCCCCCCCACTGCAGGACTCCAGCACTCAGACTCAATGGTTTGAAGTAGCTTTACAGCAGAACGAAATAATGGACGTGTTCTTCGATGACTGGGGGGCGTTGGGCGAGGATGAAGATGCATTTGGGGGGAAGGCGGACATGCACCTCAAAGAGTACCAGTCCTTCACTGACCTGCACTTCAGCAAAGAGAAAAGTGTCAGCTGTGTCAAATGGCACCCCACCATCAGCGGAGTAATTGCAGTAGCTGTTACAGAGAGGTTGTCCTTTGAAGACCGGATCAACCTTTCAACTAAGCTGCTCCTGAGCCCTTCACTCATTCTCTTCTGGAGTTTCTCTGATCCTATTAATCCTCAGTTGCGGTTGGAGTGCCCAGATGACATCTACTGCTTTGAGTTCTGCCCCTCGGATCCGACTATCATTGTTGGTGGCTGCTTTAATGGCCAGGTGGTGTTATGGGATATCTCGATGTATACTGAGCGGTTACAGAACTCGCGCACCGGAGGAGGGAAGCACGCCCCCACCAACACAAAGTCATTATCTGGCTTTGAACATAGGCCTGAGAGTGAAGCTCCCATTGTGCGCTACTGTGCCATTGCAGCTATAGAAACTGGACACCAAGCACCCGTTACAGATGTGCAATGGTTGCCAGACTACTATGAGGTCTCCAGGACTGGGGTaccactggaaaacaaaaatgggatTTGTGTCCAGCTTGCCACATGTGCTCCAGACTGctgtgtgttgttttgggaTATCCGAGCCCCTAGAGTTGCCACCCAATCAATGGCAGACAGAAAGAAACCAGAGGAGAAACCGCTGGAAAATCCCCATGGAGTTCCTAGCACCTTCAAACACCTCGACCTCACCTGGAAACCTATCATTAGGGTGTCTCTTCCAAAGATCAATACCAGTGGAGAGTACAGCCCGCTGAAATTCAGTCTGAGGGACAGTGTTGCTGAAAACCCAATGCTCACAAACGCTGATAAAGCTCAGAATCTGGAAAACACAGATGGAGGAATTGAATACAGGGTGTTAAGAGTCCCCTCAGCTAAGCACCTCAAAACTCTGGAAGATATCAGCACCAAGTTCTTTGTGGGAACAGAAGATGGAGAACTTGTGTACTTGGACTGGAAGATGGAAAAGGACAATGACTCTGGAAAAATGATTAGTTCAAAGCCTTCCCATCGCTTTAACATTCACGACGGCCCAGTCAACACAGTGCAGAGGTCTCCATTTTTCAAAGACATCATTCTGACGGTGGGAGGCTGGACCTTCGCCATCTGGAAGGAAGGAGTCATGATTGGGCCGCTCATGCACTCGGCATGTTCTCAGAAGAAGTGCACCGTGGGAAACTGGTCCCTCTCCCGACCCGGGGTGTTCTTCATCGGGAAGGAGGATGGAAGTATTGAAGTGTGGGATCTAATGGAGAAAAGCCACGAGCCTTCCCAAATCCAGAACATAACCACTGCCTCTATCACCTGCATCAAACCCTGGATTGTCTCTTcgAAGCAGCACCTCCTGGCTGTGTCTGATGAGCTCGGGACCCTGCACATTCTGGAGATCCCATGGACTCTGCACAGCCCCTCCGTCAATGAGTGCTTCAGCACGAGCAAGTACTTTGAGAGAGAAGTCAGCCACCTGGAGTACTTTGAGGAACGGCATGCGTTCAGAGCGAAAGAGAAGAACGACATGGAGGCTGAGGAACAGAGGAGAAAAACGGAACCCATCATCCCTGAGAAAACAGCCAAGCAACTGGAAGAGGAAGTGCTGAAAGAGTATGAGCAGTATCTGGAGCTGGAGAAAAGGATCCTTAAAGAGATGGGGCTTCTtcctgaggaggaggagaaagagaaattACCTGAAATTAACTCTCATTGAAGGCCAgttacataattttaaattggaaattgCTTTATTGGTATGACAGTTATAATACTTCCTTAGGATCAGTTACTTTAAGTGCGCATAGATTATTTTCATGTGATATACCactgttcatattttttattttccacttgtACAGAATATAAGTGGACTTTGTCCCTTTGTAGATG

Function

GO: NA

KEGG:

id description
K24722 DNAI3, WDR63; dynein intermediate chain 3, axonemal

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU181008 lncRNA upstream 32742 7873613 ~ 7874434 (+) True G143923
TU180890 lncRNA upstream 214912 7672816 ~ 7692264 (+) False AMCG00004868
TU180866 lncRNA upstream 297352 7608901 ~ 7609824 (+) False AMCG00004864
TU180800 lncRNA upstream 1271766 6635058 ~ 6635410 (+) True G143772
TU180738 lncRNA upstream 1406455 6500236 ~ 6500721 (+) True G143721
TU181055 lncRNA downstream 42519 7978646 ~ 8049310 (+) True G143962
TU181065 lncRNA downstream 73404 8009531 ~ 8012018 (+) True G143970
TU181094 lncRNA downstream 164899 8101026 ~ 8101339 (+) True G143997
TU181198 lncRNA downstream 857550 8793677 ~ 8825780 (+) True G144082
TU181233 lncRNA downstream 916118 8852245 ~ 8852446 (+) True G144111
AMCG00004867 mRNA upstream 36323 7742678 ~ 7870853 (+) True AMCG00004867
AMCG00004870 mRNA upstream 173117 7718273 ~ 7734059 (+) True AMCG00004870
AMCG00004871 mRNA upstream 189698 7701969 ~ 7717478 (+) True AMCG00004871
AMCG00004868 mRNA upstream 214815 7672876 ~ 7692361 (+) True AMCG00004868
AMCG00004869 mRNA upstream 240739 7648790 ~ 7666437 (+) True AMCG00004869
AMCG00004881 mRNA downstream 156684 8092811 ~ 8094461 (+) True AMCG00004881
AMCG00004895 mRNA downstream 353101 8289228 ~ 8294685 (+) True AMCG00004895
AMCG00004896 mRNA downstream 362330 8298457 ~ 8323043 (+) True AMCG00004896
AMCG00004897 mRNA downstream 397644 8333771 ~ 8345890 (+) True AMCG00004897
AMCG00004891 mRNA downstream 523223 8459350 ~ 8468770 (+) True AMCG00004891
TU180912 other upstream 176176 7729389 ~ 7731000 (+) False AMCG00004870
TU180621 other upstream 2483055 5423703 ~ 5424121 (+) True G143626
TU180426 other upstream 3535087 4371709 ~ 4372089 (+) True G143471
TU180351 other upstream 3797521 4109022 ~ 4109655 (+) True G143404
TU180311 other upstream 3957339 3949426 ~ 3949837 (+) True G143366
TU181952 other downstream 3726554 11662681 ~ 11663368 (+) True G144677
TU182286 other downstream 4844453 12780580 ~ 12781170 (+) True G144940
TU183002 other downstream 7448116 15384243 ~ 15384612 (+) False AMCG00005105
TU183561 other downstream 9829130 17765257 ~ 17771525 (+) True G145932
TU184056 other downstream 11643446 19579573 ~ 19579807 (+) True G146305

Expression Profile