RNA id: TU181227


Basic Information

Item Value
RNA id TU181227
length 691
RNA type TUCP
GC content 0.40
exon number 4
gene id AMCG00004894
representative False

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 8836360 ~ 8847775 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

NNNNNCCCGTGGTACCTGAGGGAGGCTACTTCATGATTGTGGACGTCTCTGCACTGAATGTGGACTTGTCCCACATGAGAGATGACGAGCCGTACGACTACAAGTTTGTGAAGTGGATGATCAAGGAGAAGAAACTGGCAGCTATTCCAGTGACTGCTTTCTGTGGGGACGCATCTAAGCCCcagtttgaaaaatatatccGATTCTGTTTTATCAAGCAAGACGGCACGTTGGATGCAGCAGAGGAAATTCTGAAGAACTGGAACAAAGACACCTCTGTCTAATGCAACTGTCTGATTTGGGGCTGATCTTGTGAAAGGCTCATTTTGTTATTCTCTCAAACACAGTAGAACTGTTTCGGTGCTCTATGTGGACTGTGGTGGAATGACTTATTCAGTATGTACAATCTACCTGCTGCCAATCCTATTCCAAGAAGATCAACCACGAATGGAAATAAATTGtagaacaaataatacaaataataatgaaaaaatgaatacatctcttatacataatttatatgcACACAGTTCTACTAAATCAGTACAGTACACTACTTTAGCATATTCCTGTGCCATTATTTCAGGATTTTTGATCCAAAACTGGGTAACTTAATTTGGGGAAATGTAGGGGCCTTTTCTTCACTCATGTTTGCAAAAAGCTCTTCACTCAAGTACTATTAAATGACATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU181182 lncRNA downstream 307453 8527531 ~ 8528907 (-) True G144072
TU181007 lncRNA downstream 977648 7857350 ~ 7858712 (-) True G143922
TU180909 lncRNA downstream 1110195 7722188 ~ 7726165 (-) True G143860
TU180908 lncRNA downstream 1115474 7720174 ~ 7720886 (-) True G143859
TU180906 lncRNA downstream 1117558 7718260 ~ 7718802 (-) True G143857
TU181252 lncRNA upstream 75503 8916491 ~ 8921153 (-) True G144124
TU181271 lncRNA upstream 299631 9140619 ~ 9141972 (-) True G144142
TU181346 lncRNA upstream 576544 9417532 ~ 9418417 (-) True G144205
TU181347 lncRNA upstream 579514 9420502 ~ 9420880 (-) True G144206
TU181349 lncRNA upstream 598738 9439726 ~ 9440310 (-) True G144208
AMCG00004893 mRNA downstream 960 8824870 ~ 8835400 (-) True AMCG00004893
AMCG00004900 mRNA downstream 462604 8367091 ~ 8373756 (-) True AMCG00004900
AMCG00004899 mRNA downstream 475512 8353966 ~ 8360848 (-) True AMCG00004899
AMCG00004898 mRNA downstream 547323 8276388 ~ 8289037 (-) True AMCG00004898
AMCG00004889 mRNA downstream 623265 8137946 ~ 8213095 (-) True AMCG00004889
AMCG00004901 mRNA upstream 231352 9072340 ~ 9076086 (-) True AMCG00004901
AMCG00004902 mRNA upstream 298173 9139161 ~ 9152447 (-) True AMCG00004902
AMCG00004911 mRNA upstream 384663 9225651 ~ 9268221 (-) True AMCG00004911
AMCG00004912 mRNA upstream 440206 9281194 ~ 9287486 (-) True AMCG00004912
AMCG00004916 mRNA upstream 561803 9402791 ~ 9410450 (-) True AMCG00004916
TU181155 other downstream 459359 8353989 ~ 8377001 (-) True G144050
TU180667 other downstream 3053176 5736809 ~ 5783184 (-) True G143659
TU180357 other downstream 4719946 4113747 ~ 4116414 (-) False AMCG00004819
TU180096 other downstream 5636193 3138857 ~ 3200167 (-) False AMCG00004790
TU180095 other downstream 5675687 3138857 ~ 3160673 (-) False AMCG00004790
TU181238 other upstream 31897 8872885 ~ 8906594 (-) True G144115
TU182156 other upstream 3313137 12154125 ~ 12156378 (-) False AMCG00005011
TU182157 other upstream 3313137 12154125 ~ 12156378 (-) True AMCG00005011
TU182413 other upstream 4495221 13336209 ~ 13336746 (-) True G145046
TU182803 other upstream 6123591 14964579 ~ 14967623 (-) False AMCG00005077

Expression Profile