RNA id: AMCG00004898


Basic Information

Item Value
RNA id AMCG00004898
length 2317
RNA type mRNA
GC content 0.48
exon number 18
gene id AMCG00004898
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 8276388 ~ 8289037 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gtgcatgtttatttgtaaaattgttttattttattttattcgaGCTAACTTGAGGATTTGAAAATTGGCACTTTGCTGTAGATTTTCGAAGAATCTGCCTATTGAAAACAGAATTGTGTGCATGAAGTCTCGCTCGATTTCCCCAGTTCATGTCCATATAGAGGACATCACTCCTGTCCATGTCCATGTGCAGAGAAGCCAGTCTTTACCCGCATCCACACAGAAATCTCATGTAGTCAGATTTCCTTCAGCTGACATGGAAAGTGGACgaagaaagaagaaaggcaAAATGGTTTACAGACCCCATAGTCCTGAGAAGTATAAGCCCAAGACAGATATCACAGCCAAACAGGCAGAGAGGATTTGTAGAGTGATCCAGTCAAGTGACTTAGACTTTGAGAGAGACACGGATGTGCCTGCTAAGTGGGATGATGGCCGCTTTGATCGAAGCAATGGAAGCAGAGATGAATTTGCAGGAGGAAGGAAGGATATTTTGTTTGAAGAGAGGTCAGAGGAAATGCTACACGGTTCCCGGAGGAGCGCAGGCGGGCTCTCGCCAGAACTGGTGGACCGCACAGAGGAGCTGGACGAGACCGGCACGAGTGCTGGGCAAACGAGCTCCTACCTGAGAACCACGGACTTGGAGATGGGCAGATTGAGCAATGATGCTGCTCCAGATAAGAAGCTTTTTTTGAAGACCCTCATTGAAGCCGAATCGGCTGCCAATTCTGCAGCTATACAACTTGTGTCTTTTAAGGACACTTTGAGTGACCTCCCAAGTGGTTCGTGTTTTGCTGCTCCGGACAAGTTGACAATGTCACGGCAGAAGAATCTGTTGCTGGAGAAGCTGGAGAATTTTAAAGGCGTGAATAAAGCTCTCCGTCAGCAACTGAAGGAActgcaaaagcaagaaGAAAGCCGTCACCAGGCCGACAGACACATTGATATCTTACTGAAGAAGCTGACGGAGACGGAGACTGAGAATCTGGAGAATTCAGACACAGTGGTGCAGCTCTCGAAGTCCGTGGAAGCGACACGGGCGCACTTACAGGGACGGCTTCGCAGCAAGGAGGCCGAGAATAACCGCTTGGCTGTGCAGTTACGGagtTTGGAAAGGACAATAACTGAACAGAAGTTAGAGATGGAAAACCTGAAGCAACAGATAACCTCCATTGTGGATAAAGCGGGACAAGAGAAAGAGGCGTTGAAGAAAGCCACGAGAGCTCAGAAACAGAGAGCTGAGCGCTTTGAGGCGGCCATCGAAAAATGTTACAGCCAGATGCAAGAGAAGgaTGCGAAGCTAACTGAAAGCCTGTCAGCTGCCAACACATGGAGAAGACATTACGAAGAGCTGACCAAGGAGAAGGCGCAGTTGGAAATCCAGATAGGGACTCTACAGATGCAGATCACAGACTTGGGTGAGCAGCTGCAGAAAGGAAGGGACCATGCCAGAATTTCAAATGAGGAGCTTCTGCACAAAGTAGAGAAACTCCATTCTGAAAATGCAGATGTTAACcttgaaaatgcaaaactgaaggCCACTATATCTGATTTAGAAGAGAAAGTGGCCCATTCGCTGGCTGAGCTCCAAGAACAGACGGCAGTTTCACAACAACAGAAAGACCTGGTTGAGCAGTACAAAACTCAGGTAAAAGAGCTGCAGAAGGAGGCAGACGATCTGAAAACCAGCTTTGAGgcctttttaaaagaaaatcaggtGACACAAGATGGGAAAGAGGCAGAGATAAAAAAGGTAAAAGAGCAGCTGGAGGCTCGGGTGAAGGAGCTGGAAGTTTACCCAGATTTACTGAAGGCAGCCGAGCAAAGGCTGCACGACTGCCAGCAACAGCTCCTGCTCTGCGAGAGAAGATGCTCAGACAAGTCCGCTTCTGTTAGTCAGCAGCAGGTTAAGGTGGACGAACAAACCCAGCAACTGAAATCATCTCTAGATGTGAAGGACTCGCTGCAGGAGGCCAACTTGCAGTTACAGCTCAGAATGGATGCCCTTCAGAGgaAAACCGAAGAAATTGAGTCTGAGAATCGGGAGCTTGTCAGCAAATTGTCAAGCCAGGAAGAGGCTCTCCATTACAGTGGAAAACAGCTGGAGAAGAGGTCTGCCGAGTGCCTGTCTCTGACTCGGCAGCTGGAGGCGGCGCTAGCGGACGTCAGACAGCAGgTTTCCGAAGTGAAGGAGAAGGCCTTTGATAGAGAGAGGGCCCTTCAGAGCAAAATACTTGAGCTGGAAACCGAGAAAAGCAGACGAGACAAGGAGTTGAAACAACTGAGGCAAAGCAAACAATCGGTGGGTACAGGCTGA

Function

GO:

id name namespace
GO:0006259 DNA metabolic process biological_process

KEGG:

id description
ko04110 Cell cycle
ko04113 Meiosis - yeast

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU181007 lncRNA downstream 417676 7857350 ~ 7858712 (-) True G143922
TU180909 lncRNA downstream 550223 7722188 ~ 7726165 (-) True G143860
TU180908 lncRNA downstream 555502 7720174 ~ 7720886 (-) True G143859
TU180906 lncRNA downstream 557586 7718260 ~ 7718802 (-) True G143857
TU180900 lncRNA downstream 565813 7709879 ~ 7710575 (-) True G143853
TU181182 lncRNA upstream 238494 8527531 ~ 8528907 (-) True G144072
TU181252 lncRNA upstream 627454 8916491 ~ 8921153 (-) True G144124
TU181271 lncRNA upstream 851582 9140619 ~ 9141972 (-) True G144142
TU181346 lncRNA upstream 1128495 9417532 ~ 9418417 (-) True G144205
TU181347 lncRNA upstream 1131465 9420502 ~ 9420880 (-) True G144206
AMCG00004889 mRNA downstream 63293 8137946 ~ 8213095 (-) True AMCG00004889
AMCG00004890 mRNA downstream 146101 8106410 ~ 8130287 (-) True AMCG00004890
AMCG00004878 mRNA downstream 195419 8080417 ~ 8080969 (-) True AMCG00004878
AMCG00004880 mRNA downstream 247599 8026728 ~ 8028789 (-) True AMCG00004880
AMCG00004879 mRNA downstream 260685 8011900 ~ 8015703 (-) True AMCG00004879
AMCG00004899 mRNA upstream 64929 8353966 ~ 8360848 (-) True AMCG00004899
AMCG00004900 mRNA upstream 78054 8367091 ~ 8373756 (-) True AMCG00004900
AMCG00004893 mRNA upstream 535833 8824870 ~ 8835400 (-) True AMCG00004893
AMCG00004894 mRNA upstream 547733 8836770 ~ 8847775 (-) True AMCG00004894
AMCG00004901 mRNA upstream 783303 9072340 ~ 9076086 (-) True AMCG00004901
TU180667 other downstream 2493204 5736809 ~ 5783184 (-) True G143659
TU180357 other downstream 4159974 4113747 ~ 4116414 (-) False AMCG00004819
TU180096 other downstream 5076221 3138857 ~ 3200167 (-) False AMCG00004790
TU180095 other downstream 5115715 3138857 ~ 3160673 (-) False AMCG00004790
TU180047 other downstream 5566384 2709554 ~ 2710004 (-) True G143145
TU181155 other upstream 64952 8353989 ~ 8377001 (-) True G144050
TU181227 other upstream 547323 8836360 ~ 8840988 (-) False AMCG00004894
TU181238 other upstream 583848 8872885 ~ 8906594 (-) True G144115
TU182156 other upstream 3865088 12154125 ~ 12156378 (-) False AMCG00005011
TU182157 other upstream 3865088 12154125 ~ 12156378 (-) True AMCG00005011

Expression Profile