RNA id: AMCG00004900


Basic Information

Item Value
RNA id AMCG00004900
length 324
RNA type mRNA
GC content 0.49
exon number 3
gene id AMCG00004900
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 8367091 ~ 8373756 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCAGGGTTCAGCCCACCCTACAGCAATTTCAGCCTATGGGGCAGAGCTGTCTTCAGAGGCCTGTCGAGAGGTGGGCTTCTCCAGTAACCTCCTGTGCAGCTCCTGTGATCTTTTGGGCCAATTCAGCCTAAACCAGCTGGACCCTTTCTGCAGACAATGCTGCCAGGAAGAGGCTCAGATGGAGACCAGAAAGCTGTGTAAAACAAAGAAGGATGAGCTGGAGGTGAGGCTAACTGTGCGTGAAATTGCGGTAGCAGAAGAAATTGTCCACATTTTGCAGCTGCTTAAAATAGCTTCCTTTCTTCTAATATCAACCAGCTAA

Function

GO:

id name namespace
GO:0005788 endoplasmic reticulum lumen cellular_component
GO:0008430 selenium binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU181007 lncRNA downstream 508379 7857350 ~ 7858712 (-) True G143922
TU180909 lncRNA downstream 640926 7722188 ~ 7726165 (-) True G143860
TU180908 lncRNA downstream 646205 7720174 ~ 7720886 (-) True G143859
TU180906 lncRNA downstream 648289 7718260 ~ 7718802 (-) True G143857
TU180900 lncRNA downstream 656516 7709879 ~ 7710575 (-) True G143853
TU181182 lncRNA upstream 153775 8527531 ~ 8528907 (-) True G144072
TU181252 lncRNA upstream 542735 8916491 ~ 8921153 (-) True G144124
TU181271 lncRNA upstream 766863 9140619 ~ 9141972 (-) True G144142
TU181346 lncRNA upstream 1043776 9417532 ~ 9418417 (-) True G144205
TU181347 lncRNA upstream 1046746 9420502 ~ 9420880 (-) True G144206
AMCG00004899 mRNA downstream 6243 8353966 ~ 8360848 (-) True AMCG00004899
AMCG00004898 mRNA downstream 78054 8276388 ~ 8289037 (-) True AMCG00004898
AMCG00004889 mRNA downstream 153996 8137946 ~ 8213095 (-) True AMCG00004889
AMCG00004890 mRNA downstream 236804 8106410 ~ 8130287 (-) True AMCG00004890
AMCG00004878 mRNA downstream 286122 8080417 ~ 8080969 (-) True AMCG00004878
AMCG00004893 mRNA upstream 451114 8824870 ~ 8835400 (-) True AMCG00004893
AMCG00004894 mRNA upstream 463014 8836770 ~ 8847775 (-) True AMCG00004894
AMCG00004901 mRNA upstream 698584 9072340 ~ 9076086 (-) True AMCG00004901
AMCG00004902 mRNA upstream 765405 9139161 ~ 9152447 (-) True AMCG00004902
AMCG00004911 mRNA upstream 851895 9225651 ~ 9268221 (-) True AMCG00004911
TU180667 other downstream 2583907 5736809 ~ 5783184 (-) True G143659
TU180357 other downstream 4250677 4113747 ~ 4116414 (-) False AMCG00004819
TU180096 other downstream 5166924 3138857 ~ 3200167 (-) False AMCG00004790
TU180095 other downstream 5206418 3138857 ~ 3160673 (-) False AMCG00004790
TU180047 other downstream 5657087 2709554 ~ 2710004 (-) True G143145
TU181227 other upstream 462604 8836360 ~ 8840988 (-) False AMCG00004894
TU181238 other upstream 499129 8872885 ~ 8906594 (-) True G144115
TU182156 other upstream 3780369 12154125 ~ 12156378 (-) False AMCG00005011
TU182157 other upstream 3780369 12154125 ~ 12156378 (-) True AMCG00005011
TU182413 other upstream 4962453 13336209 ~ 13336746 (-) True G145046

Expression Profile