RNA id: AMCG00004905


Basic Information

Item Value
RNA id AMCG00004905
length 7364
RNA type mRNA
GC content 0.41
exon number 2
gene id AMCG00004905
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 8889969 ~ 8906596 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAACCCGGCAGACATGTCGGCAGCTGCCAGCCAAAACCGGAATATGGGCTCGACCCTCTGGAGTATCACAACTCGGCAGATGCTGTGATCCTACACGCCACAACCGCAGACTTCAaccagatctctctctctctcggAATGTTCACCCTCACCGAAGTAGCTTCTCTCAACGATATCCAGCCGACCTACCGCATACTGAAACCATGGTGGGATGTGTTTATGGACTATCTCGGTGTGGTCATGTTGATGGTGTCCATATTTGCTGGGACAATGCAGCTAACCAAAGACCAAGTTGTTTGCCTTCCCGTTTTGCAGTCCAGTGGAGAATCCAGGTCACTGCCGGCAGATACAGGTGCAGACAGTGGAGGGGTTGGCAAGCAGCTCACATTAACCACTGAAGAGTTACCTGCTGTAGATGCGAAGAAAATGTTCAGCCAGCCCGAGCCTACAGGCCTCAAGACGAACTTAGACTTTCAGCAGTATGTCTTTGTCAACCAGATGTGCTACCACGTGGCCTTGCCCTGGTACTCCAAGTACTTTCCATACCTAGCTCTTATTCACACCATTGTACTCATGGTCAGCAGCAACTTCTGGTTCAAATATCCAAAGACTAGTTCTAAAATTGAGCATTTTGTGTCTATTCTGGGGAAGTGTTTTGAGTCCCCGTGGACCACCAAGGCGCTGTCTGAGACGGCCTGCGAGGACTCGGAGGAAAATAAGCAGAGACTAACGGGTGCCGCCTCTCTGCCGAAGCACGTCTCCACCAGCAGTGACGAAGGATGCCCCAGCCCAACCACCCCGATGCTGACCAAAACAGGCGTCAAGTTCTCTGCTGAGAAGCCCGTCATTGAAGTGCCGAGCATGACCATCCTGGACAAGAAGGACGGGGAACAGGCCAAAGCCCTCTTTGAGAAGGTTAGGAAATTCCGTGCCCACGTGGAAGACAGTGACCTCATCTATAAGCTCTATGTTGCTCAGACCATAATTAAAACCTTTAAGTTCATTCTGATCTTGTGTTACACTTCAAATTTTGTTGCTAAAATCAATTTCAACCATGTGTGCATACCAGATGTTCCACACCTAACTGGGTACACTGAGTTCGAGTGTACTCATAACATGGCCTACATGCTGAGGAAGCTGCTCATTAGCTACATTGCTCTCATTAGTGTGTATGGCCTTGTGTGCTTATACACTCTATTTTGGCTGTTCAGACGACCCCTGAAGGAATATTCCTTTGAGAAGGTACGTGAAGAGAGCAGCTTCAGCGACATTCCAGATGTAAAGAACgattttgctttccttttgcACATGGTCGACCAGTATGATCAGTTGTACTCCAAACGGTTTGGGGTCTTCCTCTCTGAAGTGAGTGAGAACAAGCTGAGAGAGATCAGTCTGAACCACGAGTGGACCTATGAGAAATTGCGACAGCACGTCACTCGCAACGCTCAGGACAAACTGGAGCTCCACCTGTTCATGCTCTCCGGGGTCCCGGACGTTGTCTTCGACCTCACGGACCTGGAGATCCTAAAGCTGGAGCTGATTCCTGAGGCCAGGCTGACGGCTAAGATCTCCCAAATGACAAACCTCCAGGAGCTGCATTTCTATCACTGTCCTGCCAAAGTTGAGCAGACGGCTTTCAGTTTTCTCCGTGACCACCTCCGGTGCCTTCATGTCAAGTTTACAGACGTTGCCGAGATCCCTTCCTGGGTGTATTTACTGAGAAACCTGAGGGAGCTATACTTGGTCGGAAATCTTAACTCTGAGAACAACAAGATGATTGGCTTAGAGTCTCTCCGAGACCTGAGGCATCTCAAAATTCTGCATCTTAAGAGTAACCTTGCCAAGATCCCAACAAACATCACAGATCTATCACCGCATTTAACCAAACTGGTCGTGCACAATGATGGTACAAAACTACTCGTACTTAACAGCCTAAAGAAGATGATGAACTTAGGTGAGCTGGAGCTACAAAATTGTGAGCTTGAGAGAATCCCTCACGCCATCTTTAGTCTAACCAATCTGCAGGGGCTAGACCTGAAATCCAATAACATTCGCACAATAGAAGAAGTCATAAGTTTCCAGCATCTTAAGAGGTTAACGTGCCTCAAACTCTGGCATAACAAAATCATCAGCATCCCTTTATCCATTAGTCATGTCAAAAACATAGAATGGCTCTACTTTTCACACAACAAGCTGGAAACCTTGCCCACCCCCCTTTTCACTCTCCAGAAACTGAGATACCTAGATGTTAGTCACAACTCCATTGCGATCATCCCACCCGAAATAGGCTTTCTACAAAACCTCCAGCATTTCGCTTGCACTGCAAACAAGGTGGAGGCCGTGCCTAAGCAGCTGTTCAAATGCACAAAGCTCAAGACCTTACTTCTGGGTCACAACTGCTTAACCATAATCCCTGAGAAAATCGGCCAGTTAGTGCAGCTCACACAACTGGAACTGAAGGGGAATTGCTTAGATCGCCTCCCACCACAGCTGGGACAGTGTCAACTACTCCGAAAAAACGGCCTCATTGTTGAAGACCATCTTTTTGACACTCTGCCTCTGGAAGTTAAAGAAATTATTAATCAGGAGTCCAATGTTACCTTTGGAAATGGCATTTAGGTGTACAATTGCCAGAGCAAAATGTTCTCTcttgtctttgttgttgttgtcttagCAGCTGGCTCGGTTCATTAGCGAATGCACTTGTGTGATCGTAATGCATGTAGAGGTGGTCAAAGTTCACGTCTCTTAAGCTGCTGGTCAGGTTTTGACGGGAACGGAACCTCAGATGGAGGCTTGGTGGTgggatttttttcattttacttaattGCTAGCGTAAAGTACAGACAACATAGCCCTCAAGGGTTAAGTTACTCCAGCTGCTGGGTGGATTGTAATTAACACAATGTGGCCTGTCTCACTTCTGATAACCGTGCTGCGGTATATGAAACGACACAGTCGACTTTCTCAAAGGAAGTAGCAGATGTTTAGAAATCCAGAGACAACCCAtaggtacttttttttttgtacagttaaaatctatatttttttattttactttgttctcTCGCTATGAGCACCCAATGCAAAGCTTGGTTTTAATAGTCATTGCTGAGATGGATTATTTTACAATAGtcttattttaaacttgtttgttttttcattcttcttcaTCTTGCCTGATAAAAGCTAAAGCACCTGGACTGAAACGGTCTGTTCTATCGAATTAGTACATTAACATGTTGTAGCTTGTGCGGGTGACATTGACCTTGAGGCATTTTGGAACTGGGGGAACAAATGCACAGGGGCACAATGGAAGAACAATAAACAACATAATTAACTGAGCTTTAAAACCACATAAAAACTGCAGAGAAAATGGTTTGTGGGGGaagtcaaaacaaaatgtcGAATGGAAACTTTCAAAGTGCTTCCCTGGATTGTTCCTGGGCCTCTTTTCTGCACTCTGCTTCGATAAGCTCCAGCATGAGTTTTTATACACTGTGTCTATCTTCCACACTATGTATATAAAGGCTGTGTAAGAAGTAGCTAAATCTATTAACTTTGATATCTTACAGTTCCAGGTCCAAATGTGATCCCctttatttgttaatgttaagAGCAAAGCTAGTACAGGATCCCCAGATACAGGTTACACTTCCAAACTGCTTTTCCACAGcaaaacagactttttaaaGAAGCGCCTGGAGGGTTTTCATCTGTCTAAAAACCCCCATAGCTCTTTGCTTTGATGTTATTCCCCAGTACGTATACACTGTGCTGAGAACCAAAGATCTTTGATTCcaaatacattgaatttatTAGCATTTGTCTGAAATAGTGAAACATGTAAACTATTAAGATTGAAAAATGGCACCAGAGAATGTTAGTTTACTCTGTTTTCTCCTTCAATGCGTTTGTGAACCCAAAACAACTACTCATTAAAGTTTCTTCATTTTAAGGCATTGAACTTTAGATGTGATTTTTAATTTCTCCGTCATAAAATGCGTAGTGCTCTGTATGATGCAATTTTTTCCTTTACTATTCAGTTCTGCCAACCATTATAGGTGTAAAAAACCATCCAGAGTCAAGCTGTTGGTTTTGTCAGCTTTAGTTTTTTCGATAGAAGAAAGTTGTATTGGGACAAAACCATTAATTAcatatgcaagaaaatatacttttattttaatcaaacttTAAGTTGCTGATTTGAACAAACCATCAAGGTATATACATCTTTCAAGTTGAAACGAGCCAATTTACAACAGTAGATATTAAATATGCTTATTGAGCTAAACATTAATtacccttttttgtttgtttagttttttctgccCCATCCAAGTAAATGCTATTCAGTGGTATAATGTCTGAAGATTAATTcccattttataaataaaatataaacatgctATGTCTGATAGAGGTTTGGGTAACAAGAATACTTGTTGCCATTGTGTTCAGAAGCTTTGATGTTGTGAAGCAATTGAAGCACAGGTTCATGAGACGTCACTTCTTATTTTTGAAGCAACTGTTCACTCTGAAAGTTTGGTTGGACTCAGatgaacttttctttttcagtcaaCACTACTGTGTAAAGACCACAGCAAGACCAGAATATAAGATTGTATTCCACATTACCTTATCCAGAAGGTTTAGGAAATTAACCATCATCCAAAATCAACAAAGACATGTTATATTGTATCAAATTCCAAACTTGATTTATTCAAACTGCGATAAAGGTCTTTGTTAAATGAAATGGCCCACTTTTACTCAACGTTTGcaagaaataaatgataaaaattGACTGCAAAATAACCCTCTTCTCTAAGTGCATAAACATGCAGTAACAGGCCAAGGTGATTTAATTCACAGCCGAtttgaaacattgttttattttaaggtctGGCAGAAGAAATAGTTCAGTGTCATTCCATCCCCTTCATAGACTGGGTTGCATGCCTGATCTTGACAAAAGCAACCTGACATTGTTTAGtctgtgatttgtgtttttaatatattatttcctcTTTGAGCAAGTTAATTAACAAAGtcttaaattattgttttcattttgtttccattattattgtgttttaagtgGCTTTTGTATGAATATATGTGGCAATCTTTAAGAAACGTAAAGTTTTTCTGTACAACGTTTTCAGGATGCATGTCTCTGCTTATGTTATGGATGATATAATATCCATCAGGTTGCTTCAGGATTTGTAGGAGCATCAAGTTGTGATGCTGTAGCCTTTTCCATCTGTTGGGTGTGGTTTTAAGGGCAGGATTTGTGTCCTTCGGTGTCCTTCTGTAGAGTAGCCCAGGTGTGGCTATCAGGATTGCAGCATGGCCCACGTCTGTCGCCCGCCTGGCTTAGACAGTACCGTTGTAGCTAGTACGCAGCTCCGTACTAACAGTGCAAGTCACCgttggtgttcattttaatttcattcattttatttacttcatatCGTTGTTGtgttaaaactaataataattgaagCAGTGTGGCTCTGAGCTTCTCCTCCGCCACCGAAACTCTCCCCATCAGAGGCCCGATCCCGCCCGGGACTTGGTCTGATCCTCATGGCGAGGCTCAGGGGCCACAGGGACCGGGGGCTCTGACTGCGGGTCTGTGGGGTGAGCTCAGCCCGCCGCGCCTCTCTCCCTGGGTCGAGCTCTCCTGTGGTGGCCGCAAATCTCAGCGAGTCGCGGTAATCGGCGCCCTGTCGCGCAGGTGCTCAATCAGGGCAGGGAGGGTCCCGCACTGATGACATCAGCTCGGAAAGACGGCGTGTAGTTTCCTGACgcaacattttcattaaatacgGAGTGAGTGACGTCATGGCCAACAGCACTGAGGCCCGGTTAGTTTGCGTGTGAAGGGAACGGTGATGGCACTTCGTGCCCTGTTTGAAAAGCTACACGGGGAACATGTCTCGCATGTCTCTTTTAGGTTATTATTTTGCCATTCCAtctactttatttaaatacactttaaacTAAACTTTTCCAACTTTATAAAAGTAGatgtaaagtaaaagtaaaagtttgttttatatgtgaTTTCTGTTGGATCTTGCATTGTTGTTTCGTCTCGGCTAAAGAGTGTTTCCCACGTTTGCTTTTGGGTTTGTTCCCATACAGATTGACTGTGCTGCAGTTGGGCTGTAAAGGCAGAGCTGGTTAAAGGGGTTTGAAGTAACGGGTGGGTGACAGTGCTATTCAGATTACAGCTATATACcttgtgattttatatatatatatatatatatataatatatatatatgtgtatatatatatatatatatatgtgtatatatatatatatatttttttccaaaactgcaATGGCTGAGGAAACATACAATGTTTTCAATAATGGCATGTCATCCATAGTCAGTATACAGTTACTACAAATTGGATCTACTTATAGAGAAGTTAATACTTAGACTTTATACCTTTTTGTGTCTGCATTATGAAGTTTTGCTTTCAGCCCACACTTGTACGGGTTACATATAGtccacaaaacaagaaaacagaattAGCATTTGATAAGTTGTAAGAACCAAAAAATGTGGTACATCATAAATAAGTGGTAGCATGCcatatattattactgttttaatggccattgtttttctaattgttttaaattattttaatttaattttatatcagATTTCCAACTTTGTACTGGAATGCTTGAGTCATGGTAAGATTTGATGTTTCTTTAAAAGTGAACTCTTTTGTTAAGGAACAACTATGGCATAAAACAAATGGTTGTTGTGCTTGGGAGGTCCATGTGTACAAcatgtattgtaattatttaatgatttaaatcaGTTAACTTTCACGTATATGACATGTATCAGCACAGTTCTGATCTAATTAGTCTCTTATGCATATGTATTTCAACCAAATTGGACTAATTCGTCACCAAAAAtaactgtattttctttgtttgagacgcaccaaatatattttaatgtttttgtatatcTCATTCCATTtgtcatatttatattgttttgaaattaaaccaTCGTATTCTGAGGGACAAAACTGTAATGTGTATGTTCTGCTTGGAACATAACTCACCAGATGTTACTAGCAACATGTATCAATGCCCGCATTGTACACAATGTACGCAACACAACTGACTCCACTGCAGCTCCTCTTATAGTCAGAATAATTGAAATTGGCAGTAAACTGGAATGTAACATCAGTAAATACTgcaataatcaaaaataaaatcaatccatTGGTTCTTACTCACTCTATCTGGATATTTCTAAGTGCTGTATATTATTGGCAAGATCATTTTTttgaagaataaatacaattaaatgaaata

Function

GO: NA

KEGG:

id description
K22038 LRRC8; volume-regulated anion channel

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU181233 lncRNA upstream 37523 8852245 ~ 8852446 (+) True G144111
TU181198 lncRNA upstream 64189 8793677 ~ 8825780 (+) True G144082
TU181094 lncRNA upstream 788630 8101026 ~ 8101339 (+) True G143997
TU181055 lncRNA upstream 840659 7978646 ~ 8049310 (+) True G143962
TU181264 lncRNA downstream 234046 9140642 ~ 9141904 (+) True G144136
TU181265 lncRNA downstream 238858 9145454 ~ 9145853 (+) True G144137
TU181268 lncRNA downstream 263399 9169995 ~ 9170249 (+) True G144139
TU181270 lncRNA downstream 266309 9172905 ~ 9173149 (+) True G144141
TU181336 lncRNA downstream 537060 9443656 ~ 9443894 (+) True G144195
AMCG00004903 mRNA upstream 10233 8854259 ~ 8879736 (+) True AMCG00004903
AMCG00004906 mRNA upstream 67035 8792926 ~ 8822934 (+) True AMCG00004906
AMCG00004892 mRNA upstream 361235 8514010 ~ 8528734 (+) True AMCG00004892
AMCG00004891 mRNA upstream 421199 8459350 ~ 8468770 (+) True AMCG00004891
AMCG00004897 mRNA upstream 544079 8333771 ~ 8345890 (+) True AMCG00004897
AMCG00004904 mRNA downstream 1235 8907831 ~ 8917401 (+) True AMCG00004904
AMCG00004910 mRNA downstream 242916 9149512 ~ 9198176 (+) True AMCG00004910
AMCG00004909 mRNA downstream 294529 9201125 ~ 9211479 (+) True AMCG00004909
AMCG00004907 mRNA downstream 418944 9325540 ~ 9343692 (+) True AMCG00004907
AMCG00004908 mRNA downstream 440252 9346848 ~ 9355689 (+) True AMCG00004908
TU180912 other upstream 1158969 7729389 ~ 7731000 (+) False AMCG00004870
TU180621 other upstream 3465848 5423703 ~ 5424121 (+) True G143626
TU180426 other upstream 4517880 4371709 ~ 4372089 (+) True G143471
TU180351 other upstream 4780314 4109022 ~ 4109655 (+) True G143404
TU180311 other upstream 4940132 3949426 ~ 3949837 (+) True G143366
TU181952 other downstream 2756085 11662681 ~ 11663368 (+) True G144677
TU182286 other downstream 3873984 12780580 ~ 12781170 (+) True G144940
TU183002 other downstream 6477647 15384243 ~ 15384612 (+) False AMCG00005105
TU183561 other downstream 8858661 17765257 ~ 17771525 (+) True G145932
TU184056 other downstream 10672977 19579573 ~ 19579807 (+) True G146305

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
tiger barb (Puntius tetrazona) TU150077 False 2052 lncRNA 0.37 2 NC_056712.1 21497055 ~ 21504865 (-)
tiger barb (Puntius tetrazona) TU65824 False 5030 TUCP 0.39 2 NC_056704.1 11415273 ~ 11420330 (+)
mexican tetra (Astyanax mexicanus) TU150077 True 5039 TUCP 0.43 2 NC_035909.1 14042858 ~ 14047930 (+)