RNA id: AMCG00004907


Basic Information

Item Value
RNA id AMCG00004907
length 5166
RNA type mRNA
GC content 0.46
exon number 18
gene id AMCG00004907
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 9325540 ~ 9343692 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CATCATCATGCCCCCTCCTACCTGGGCGCGCTGTAACAGCCGTACGGTCTGCTATTTCACACCGGACTCAGGAAAAGACCGCAGAGGCCGTGTGCGAGGGGTAGCGCCAGGGCTGACTGTGTGGGGACAATCGCGGTCATGGCGCGGTTATATTTGTGTCGAAGGGCCGCGCCTGGGTATCACATGTGCTGGAAAGGGGAGCTTTATTCGGGAGGCGCGGAAAGTTCTGGAAGGGTCACGTGATCTCGCGAGACTAGTGACGTGATGCGTCCGGACGAGAATATGACGTGAGCgccgttgttgttgttgttgttgttttcgcCCGGGGAGAGCCGCAAGTTTATATTCGCATGTTTCAGACCCGAGGAGGAGGCGGACAGGGAGCCGATGTCGACGACGGAGAAGTTAAACAACGGAGAAagtgaagatttaaaaaaacaaaatacctatAGGGTTTCCGTGAAAAAGGGGCTCTTTTGGAGAAGAGCGGCGAGTGGCGGAACACGTGGAGGGAGCGGGCCAATGGGAGGCCGCGCACCGAGCCGGAGTGTATAAATACCGGGCGGCTGCGGTGGGAGCCGTCCGCCATAGAAgacgaaaaagaaaaaaagactaagaattaagatttaatttcGCATAAAATAGCCTTATCGTCGCCTAACGCACCGACAAGAAACGTCGCTTTTCATCCTCCGTGTTGAACATCTTCGGCACAGACCGTCTGTCTCAGTTCTGCAGTTTATTCAATCTTTGTGCCAGAGAGACGGAaagATAAGAAGGAAGATCTTTTGAGAAATTGAATATGCTGGGAAGGAAGACTATATTCTAATCTCTCAGAAGATGCTGAAACCTCCCAAGATGTCGAGTGTTAAAGGAACAACAAAGACTTTCATTGGAAACCCTCCACCCCCTCAGTATAAAAACCCCAAAAAGCCTGGACGTCTTACCAATCAGCTCCAGTACTTGCAGAAAGTAGTGGTAAAGGCTTTGTGGACACACAACTTTGCATGGCCTTTTCGACAGCCAGTGGATGCTGTGAGGCTAAACCTTCCACCTGGAGATGACATTGTTCTAATGGCACAGGCTTTGGAGAAGCTTTTTCTTCAGAAAGTGGCACAAATGCCACAGGAAGAAGTTGAAATCAGTATGATGATGAACAAGGGAGGAGGAAAAGGAAGGAAGCCTTCAGCAGGTCTGTCCAAGCTGAAGCCTCAGTCTCCGGTCTCTGAAGTTGTGTTTCAGCAGACTGTGACAGTGATTCCTTCAGAGGCCCTCCGTACAATCCCTTCTGCACCTTTAATGTCTGCACATCTGTCATCAAAAGTCAAAAAGggcattaaaagaaaagcagacaCTACGACTCCAACGGCATCAGTCATCACAAGTGGCGAGTCGTCACCTACTCCTACAGAACAGAGGCCgtgcaaattattttcaagaCGAGGAAGCGGTCGGCCTATTAAACCACCAAGAAAAGACCTACCAGACTCCCAGCAGCAACATCAAGTCGGCAAGAAAGCCAAACTGTCAGAGCAGCTGAAATACTGCAATGGGATTCTGAAAGAGatgtttgcaaaaaaacatgcagggTATGCTTGGCCATTTTACAAGCCTGTTGATGCAGCCATATTGGGACTTCATGATTATCACGATATTATCAAACATCCAATGGACCTTAGTACCATAAAAAAAAAGATGGATGAAAGAGTATACAAAGATGTACAGGAATTTGCATCAGATTTTAGGTTAATGTTCTTGAATTGTTACAAATACAACCCCCCAGACCACGAGGTTGTAGCAATGGCAAGAAAAATGCAgGATGTCTTTGAGATGCGCTTTGCTAAGATGCCAGATTTTGAAAGTGTACAGCTGGAGACTCCTGTCCCAGAGAAGAGGGACCCCTCGCCCAGCAGTGATAGCAGCAGCGAGAGCTCCTCCGACTCGGACAGCTCCTCGGACACCGAGGAGGAACGGGTTCAGCGGCTGGCACGGCTGCAAGAGCAGGCATGTGGCACCATGTTTCTAATCGCCCATGGCCATCTTGCCTCATACACTGCATTTGAGTCACTTCTGGAAAGGAGTCTGAAAGAAGTTCGTGAACAATTGCAGATACTTACCCAGGCTCCCTTGCTGAagccaaagaagaagaaagaaaaatctaagaaagagaagaagaaaaaagagagggacaaaaaggaaaaaacaaggaAGAAAGGTGTCGAGGACAAAAGGAAACCGAAATCCAAAGTGCAGAAAAAGTCCAGTAAGGGAGCTCCAGTGGTTCAAAGTAAGAAAAGCAATTTGCCGATCCTGCCGTGTGACTCTGATGAAGAACCTGCAGTCCCGATGACATATGATGAGAAAAGACAGCTGAGTCTTGACATAAACAAGCTTCCTGGTGACAAGCTTGGAAAAGTAGTTAATATAATCCAGTCAAGAGAGCCATCACTGAGAGACTCCAATCCGGAGGAGATAGAAATTGACTTTGAAACGTTAAAACCGTCAACGCTAAGAGCCCTCGAGAGATACGTCATGGGATGTCTTAAGAAAAGACCGAGAAAACCCAACCagaaaaaagCCCCCAAATCCAAGGAGGAGCTGCAGTGTGAGAAAAAGCAGGAGCTTGAGAAGCGCTTACACAATGTCAGTGAGCAGTTGAACTCAGTCAAGAAGACGAAAACTAAGTgtgaAAACACTGATGCCACTCAAGTCCTCGGAGGCCCCTCTCGATTAAGCGATAGCAGCAGCTCCTCAAGCTCTGACACCAGTAGTAGTGATTCTAGCACTTCTGATAGCAGTGACTCTGAATCAGGACAGAAAACGAAAAGGAAGCAAATGAGAACAGATGTCAAAATCGTAACCAAGGAAGGAAAGCAGGCCTCGGCTGCTGTGCGAAATTCTGCTCCCGCAGGTCCAATTGAACCTGCAATTGAGACGAGCTTCCAGCCTGCCATTACGGAGCCTCCATTGCCACAGCTGAACCTGTTTAAGCCTTTGCTGCAAGACCGACTGCATCTACCTAAACAAATCATGGTCTCGCCCCCAGCCTTACACACCCGTCTGCCACCACAGCCATCGAGGCCTAGTGCCAAAGCAGCACCTCTACCTCCTAAACACAGGCCTTCTGCCCAGCAGCCTGACTCAGTCCAGCAACCACAGGCACTTGAAGAGACATTCGGTCAAACCCCGAGCCCCCACTCTCTCTGTCCCGAACACACATTGCCCTCAGAGCCCCCAGATGAGGCCGCTGAGCGACACTCAGATCTCAGTCTGCTCCACTCGGCCGAATTGAACCCCCCGTCACATTCACCTCCACGTGAGCCTGTTCAAATGCGGCACCTCCAGTCTATGCCACAAACACCGGAAGTCCAAGCTGGGCAACCGTTGCTCAGCCGACTACATCTTCTATCCGAGAATCCTCCCACTAGGGTACAAACCGAAGGCATGTCTACACTCTTGTCTCCTTTGAATTCCCCGTCTGTGTTCTCTCGCAGTGTGTCGTCTTCAAATcctgcacacaaacacgcagCCAACGTCACAATGGAGGACATTGTTCTGAAGAATGCTGATTCCTGGGCCAGTTTGGGAAAGATGACGACATTCACTCCATCCATGATCAGATCTTCAAATGAGAGCTTCCAGCAGTTTAGGAAAGCTGCGATGGAGAAGGAGGAGCGCGAGAGGGCCTTGAGGAAGCTGCAGATGGGACAGGCAGGAAGGGAGAAGACAACGGTGGCTGAGAAACCCAGagagcaggacagtgaACCATCTGTAGATATTGTACCGCCTGCTTTGGAAGTGGAACCTCCTAAAGCAGAGGAAACGCCAACAACTACAGAGGCCAAACTACAACAACAGGCCTCCGTGGACCGAGAGCGAGAGATGGCCCGTAAACGAGAGCAGGAGCGCAGGAGGAGGGAGGCTATGTCGGGCATCATTGACATGACTCTGCAGAGTGACATCATGgcaacatttgaaaataatctttatTAATACGAAGCTGGTGGACGGGGGGGAATAACTGGCTGGCATCTTGCATTGTGGGATGCTACTTAGAGCTGTTTATGGCAACAGAAAACGACTTTTTCCAGGCACTGGATGTCTGAGTAATGGATGCTTGTTGAAGGAAACTGGTCATTATTGTCCAAGAAAATGTGCATGACATTGCTTACTATTGTATTATAAAGttattgtaatataatgtacagtGTAATATACTGTGAACCTGTACACACCGACCACATTGAGGCTGGCTCTTGCCTTCTCCTGTACAGGGCATAGTTTAGTGAAGTTATAAAACACTTGCACTCGaggtactgtatgtgtgtttgtatgcagaTGTTGTAGGAGGGTCTGTAAATTAAGAGAGAAGTGTTGTACGTTTGAAACTGACTTTCAGTCCATGTTTTATAATCAGTTCTAGGTATTTTGTTCAGTTAACTAAAAATGGAGGCTGTCACCCATTTACATTCCACTTTTTCTTGCTGTATACCTTCCCAGTTTACAATATTGTTAATGTGTACTTGATTTTCTCCCACCTTAATCTTCCTCCCTGGCGTTTGCTTCTATACTGCTAATTTAGTATTCAAATACAGATGACTATGCTTTGCTGTTCTGACTAAACTTGAATGCCTGTTAATGAAACAGTTTGATTTAATGAGGACTGTCCTCTGCaatattgtttactgtaataCCAGACTCTATATTGAAGTattacttgtttatttgtaataaaataatccttAGCAAATTGTTATCTGGAAGTagcagttaatttgtttttgccaaATGTTGATATTCACAGTTGGGAGTGTATTTTTCAAGGGTACTGTATGCTTCCCCTGTTGGTTTCCCGAAGACTGCAATGCCACAAATTTGATGTGCTTATTTATGAAAATTTAGGTAATCTGTGCCTAAATTCAGACTGGTGTGAGGAAAAGGAAATGATTATACTTTGAATGTGTCTGTTGTTCTCGGCTGcaatttaaatgtcacaatggaAACTTTGAAGTTGTGAAGTttgagattgtttttgttttttacgtCTGCTGTCCTGCATACAGTAGCACTTTCTCTTCTGTATACATTTAAGATGTGAGAGAGCATGACTTGACTATATAGAGagataatatataattttgaagaTAAAAATCACACTATATGGAA

Function

GO:

id name namespace
GO:0001207 histone displacement biological_process
GO:0007283 spermatogenesis biological_process
GO:0051039 positive regulation of transcription involved in meiotic cell cycle biological_process
GO:0043484 regulation of RNA splicing biological_process
GO:0007141 male meiosis I biological_process
GO:0005634 nucleus cellular_component
GO:0070577 lysine-acetylated histone binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU181270 lncRNA upstream 152391 9172905 ~ 9173149 (+) True G144141
TU181268 lncRNA upstream 155291 9169995 ~ 9170249 (+) True G144139
TU181265 lncRNA upstream 179687 9145454 ~ 9145853 (+) True G144137
TU181264 lncRNA upstream 183636 9140642 ~ 9141904 (+) True G144136
TU181233 lncRNA upstream 473094 8852245 ~ 8852446 (+) True G144111
TU181336 lncRNA downstream 99964 9443656 ~ 9443894 (+) True G144195
TU181351 lncRNA downstream 103897 9447589 ~ 9448533 (+) True G144210
TU181359 lncRNA downstream 120449 9464141 ~ 9466613 (+) True G144218
TU181368 lncRNA downstream 150804 9494496 ~ 9500978 (+) True G144227
TU181382 lncRNA downstream 210408 9554100 ~ 9557475 (+) True G144237
AMCG00004909 mRNA upstream 114061 9201125 ~ 9211479 (+) True AMCG00004909
AMCG00004910 mRNA upstream 127364 9149512 ~ 9198176 (+) True AMCG00004910
AMCG00004904 mRNA upstream 408139 8907831 ~ 8917401 (+) True AMCG00004904
AMCG00004905 mRNA upstream 418944 8889969 ~ 8906596 (+) True AMCG00004905
AMCG00004903 mRNA upstream 445804 8854259 ~ 8879736 (+) True AMCG00004903
AMCG00004908 mRNA downstream 3156 9346848 ~ 9355689 (+) True AMCG00004908
AMCG00004914 mRNA downstream 16208 9359900 ~ 9397437 (+) True AMCG00004914
AMCG00004915 mRNA downstream 56104 9399796 ~ 9402207 (+) True AMCG00004915
AMCG00004913 mRNA downstream 68212 9411904 ~ 9418523 (+) True AMCG00004913
AMCG00004918 mRNA downstream 203536 9547228 ~ 9553629 (+) True AMCG00004918
TU180912 other upstream 1594540 7729389 ~ 7731000 (+) False AMCG00004870
TU180621 other upstream 3901419 5423703 ~ 5424121 (+) True G143626
TU180426 other upstream 4953451 4371709 ~ 4372089 (+) True G143471
TU180351 other upstream 5215885 4109022 ~ 4109655 (+) True G143404
TU180311 other upstream 5375703 3949426 ~ 3949837 (+) True G143366
TU181952 other downstream 2318989 11662681 ~ 11663368 (+) True G144677
TU182286 other downstream 3436888 12780580 ~ 12781170 (+) True G144940
TU183002 other downstream 6040551 15384243 ~ 15384612 (+) False AMCG00005105
TU183561 other downstream 8421565 17765257 ~ 17771525 (+) True G145932
TU184056 other downstream 10235881 19579573 ~ 19579807 (+) True G146305

Expression Profile