RNA id: AMCG00004913


Basic Information

Item Value
RNA id AMCG00004913
length 1464
RNA type mRNA
GC content 0.55
exon number 7
gene id AMCG00004913
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 9411904 ~ 9418523 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAAGATGTACAGAGGAGAAACAGCCGGTCTCCGAGATCTGGGAGGAAAGGAGGAAAAGCAGCCAAAGCACAGGCAAATATAGAAGTAGCAAAAAGGAGAGAAGTGGTGAAGGAGACTTTAAGGAAGAAACTAGAACAAGAGCAGAGGGCCCTGCACATCGTGGAAAGGCTACTGGAGGACAATGTTGCAGAAGATTTTCTGGTGGATTGTGTAAAGTTCATCACATCTGAAAACTACAAAGACACGGTGGAAGAGAGATCTATTGCCAAGATGTGTGGATACCCTCTCTGTCAGAACAAACTTGTCAATGTTCCTAAACAGCAGTACAGAATTTCAACGAAGACCAATAAGGTGTATGACATCACAGAGCGAAAGTGTTTCTGCAGTAACTTTTGTTACAAAGCATCAAAATACTTTGAAGTCCAGATTCCCAAGATTCCCTTGTGGCTGAGAGAGGAAGAAGGTGGGACCTTGGGAGAGGAGGTGCAGATAGCTGACAAGCCACTATCAGTGTCAGAGATCGAGAATCCCCCCCTGCTGGAGGAGAAGCGCCCTGACTTGCCGTTGTTGGCCACCGAGAGTGACAGCAGCGAGCCCGAGCAAGAGTTCATCTCCAGCATGGTGTCCGCAGGGAGGGTGGGGCCCAGGCACGGAAAGCACCCCCCCACGGATAAGACTGAGCGACACAGGAGTGCACAGGAGAAACCCGGCGGAGGTGtgggggtggtggaggaggccACGGAGCGATTGAGCAAGTGTGTAATAGCCAGCACTGAAGGTCAGGTCACCACCGCTGGTCTACCAGAGCAGGACAACAGTGTGGGGCTGCCTGTAGCGGACAGACGCACAGACCCAGAGCGTGAAACTAAAAATGACACGCCTGAGGACCTGAACATCACGTGCATCGGCGTCAGCAAGAAAGGAGCAGAGGGCCTGAAGGGTCTCCTCGCGAAACACAGGCTGGACCGGGAGGCGCCTCCGTCTGTGGTGAGAAGGAGCCTGCTGGAGACCTTAAGTCGAACGCTGAGCGAATGGAAGACCCAAGAGACACTGCGTTTCCTGTACGGGCCGGACTATAAACCAACAGATTCCGCGGAGGCTTTGGCCCAGCCGGAGGAAGAGCTGGACGAGGACGACCTGGAGGAGTGGGAGGGGGAGTTGGCGGTGGGCGGCTCTGGTCCTGCCTCACGAGGGGCTCGGCCGTCTGCCCCGCTGCCTGACTACCAAGTGCTGAAAAAAGAGACTGAGCTGCTGACCTCAAGGGTCCTGGAGTTTTTCAGAGGGCAGTATGTCTTGCTGGAAGAAGCTGAGCAAAACCCAGGCCTGCAAACTGAGAGCAGTGTGGTGAGTATGAGCCACGATCGCACCCCGGCCACTCTTGTTGCACTGTGGTTCCTGCAGACAGCTGTGGGCAGCACTGTCATGTCCCGGGGCTCTGAGTCTCTGAGACGGATGTCATAG

Function

GO: NA

KEGG:

id description
K20827 RPAP2; RNA polymerase II-associated protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU181270 lncRNA upstream 238755 9172905 ~ 9173149 (+) True G144141
TU181268 lncRNA upstream 241655 9169995 ~ 9170249 (+) True G144139
TU181265 lncRNA upstream 266051 9145454 ~ 9145853 (+) True G144137
TU181264 lncRNA upstream 270000 9140642 ~ 9141904 (+) True G144136
TU181233 lncRNA upstream 559458 8852245 ~ 8852446 (+) True G144111
TU181336 lncRNA downstream 25133 9443656 ~ 9443894 (+) True G144195
TU181351 lncRNA downstream 29066 9447589 ~ 9448533 (+) True G144210
TU181359 lncRNA downstream 45618 9464141 ~ 9466613 (+) True G144218
TU181368 lncRNA downstream 75973 9494496 ~ 9500978 (+) True G144227
TU181382 lncRNA downstream 135577 9554100 ~ 9557475 (+) True G144237
AMCG00004915 mRNA upstream 9697 9399796 ~ 9402207 (+) True AMCG00004915
AMCG00004914 mRNA upstream 14467 9359900 ~ 9397437 (+) True AMCG00004914
AMCG00004908 mRNA upstream 56215 9346848 ~ 9355689 (+) True AMCG00004908
AMCG00004907 mRNA upstream 68212 9325540 ~ 9343692 (+) True AMCG00004907
AMCG00004909 mRNA upstream 200425 9201125 ~ 9211479 (+) True AMCG00004909
AMCG00004918 mRNA downstream 128705 9547228 ~ 9553629 (+) True AMCG00004918
AMCG00004926 mRNA downstream 164878 9583401 ~ 9593194 (+) True AMCG00004926
AMCG00004925 mRNA downstream 175498 9594021 ~ 9618789 (+) True AMCG00004925
AMCG00004927 mRNA downstream 214314 9632837 ~ 9646412 (+) True AMCG00004927
AMCG00004928 mRNA downstream 228943 9647466 ~ 9651063 (+) True AMCG00004928
TU180912 other upstream 1680904 7729389 ~ 7731000 (+) False AMCG00004870
TU180621 other upstream 3987783 5423703 ~ 5424121 (+) True G143626
TU180426 other upstream 5039815 4371709 ~ 4372089 (+) True G143471
TU180351 other upstream 5302249 4109022 ~ 4109655 (+) True G143404
TU180311 other upstream 5462067 3949426 ~ 3949837 (+) True G143366
TU181952 other downstream 2244158 11662681 ~ 11663368 (+) True G144677
TU182286 other downstream 3362057 12780580 ~ 12781170 (+) True G144940
TU183002 other downstream 5965720 15384243 ~ 15384612 (+) False AMCG00005105
TU183561 other downstream 8346734 17765257 ~ 17771525 (+) True G145932
TU184056 other downstream 10161050 19579573 ~ 19579807 (+) True G146305

Expression Profile