RNA id: AMCG00004915



Basic Information


Item Value
RNA id AMCG00004915
length 552
RNA type mRNA
GC content 0.52
exon number 5
gene id AMCG00004915
representative True

Chromosome Information


Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 9399796 ~ 9402207 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGCGGGAAGCGGGAAATGGCGGGACAGCATGAAACCCTGGAAGACCACGATCATCATCAGTGCCTGCCTTCAGAACCACGAAGCTGCCCTTTCCTTGTCCGCCCAGCAGCACCGGGTTCGGTACTCGGACTCGGTGGAGCGGGGCACCTTCATTTTCCCCCGGTCAGGGATTGCATTCATGATCGTAGATACACAGCAGTTTCCAGAAGAGGCCGGGCTTTTAGAGCAGATCAAGAAGTTCATACATGTTCACAGAAAtggttttcttcttttattagCTTCACTCCATGGGGAGAAGCAATGGGGGATACTCTCGAGCATTCAGCAGAGGCAAGTATGCTGCCACAGAAACCTGTTATTGTTCTTAGGCAGCAATCTCCGTGTTTTACCAGTGCACAACATTGCAGAGATTGTAAAGAGCATGCTTACTATAGCAAAAGCAACAAGTAAACCTCACGTGGACAGTGTGCGGGATCGGATGACTCTGGCGAGGGCCCAGATCATCGAGAGGAGCCCCGTCTGGGAAGTGCTTCGAAAACTGCAGCTCGAC

Function


GO: NA

KEGG:

id description
ko04114 Oocyte meiosis

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU181270 lncRNA upstream 226647 9172905 ~ 9173149 (+) True G144141
TU181268 lncRNA upstream 229547 9169995 ~ 9170249 (+) True G144139
TU181265 lncRNA upstream 253943 9145454 ~ 9145853 (+) True G144137
TU181264 lncRNA upstream 257892 9140642 ~ 9141904 (+) True G144136
TU181233 lncRNA upstream 547350 8852245 ~ 8852446 (+) True G144111
TU181336 lncRNA downstream 41449 9443656 ~ 9443894 (+) True G144195
TU181351 lncRNA downstream 45382 9447589 ~ 9448533 (+) True G144210
TU181359 lncRNA downstream 61934 9464141 ~ 9466613 (+) True G144218
TU181368 lncRNA downstream 92289 9494496 ~ 9500978 (+) True G144227
TU181382 lncRNA downstream 151893 9554100 ~ 9557475 (+) True G144237
AMCG00004914 mRNA upstream 2359 9359900 ~ 9397437 (+) True AMCG00004914
AMCG00004908 mRNA upstream 44107 9346848 ~ 9355689 (+) True AMCG00004908
AMCG00004907 mRNA upstream 56104 9325540 ~ 9343692 (+) True AMCG00004907
AMCG00004909 mRNA upstream 188317 9201125 ~ 9211479 (+) True AMCG00004909
AMCG00004910 mRNA upstream 201620 9149512 ~ 9198176 (+) True AMCG00004910
AMCG00004913 mRNA downstream 9697 9411904 ~ 9418523 (+) True AMCG00004913
AMCG00004918 mRNA downstream 145021 9547228 ~ 9553629 (+) True AMCG00004918
AMCG00004926 mRNA downstream 181194 9583401 ~ 9593194 (+) True AMCG00004926
AMCG00004925 mRNA downstream 191814 9594021 ~ 9618789 (+) True AMCG00004925
AMCG00004927 mRNA downstream 230630 9632837 ~ 9646412 (+) True AMCG00004927
TU180912 other upstream 1668796 7729389 ~ 7731000 (+) False AMCG00004870
TU180621 other upstream 3975675 5423703 ~ 5424121 (+) True G143626
TU180426 other upstream 5027707 4371709 ~ 4372089 (+) True G143471
TU180351 other upstream 5290141 4109022 ~ 4109655 (+) True G143404
TU180311 other upstream 5449959 3949426 ~ 3949837 (+) True G143366
TU181952 other downstream 2260474 11662681 ~ 11663368 (+) True G144677
TU182286 other downstream 3378373 12780580 ~ 12781170 (+) True G144940
TU183002 other downstream 5982036 15384243 ~ 15384612 (+) False AMCG00005105
TU183561 other downstream 8363050 17765257 ~ 17771525 (+) True G145932
TU184056 other downstream 10177366 19579573 ~ 19579807 (+) True G146305

Expression Profile