RNA id: AMCG00004916


Basic Information

Item Value
RNA id AMCG00004916
length 1788
RNA type mRNA
GC content 0.51
exon number 17
gene id AMCG00004916
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 9402791 ~ 9410450 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCTCTCGAGCAGCTGAATGACATGATAAAGAGATGTCTTTGTAAACGATGCTGTTGCTCCTTATCTTTGCAGCAGGTGGTTCCTGGTGACGGTTTCAAACCCGAAGACTATGATCAATTCCAGAATGCTGGCCGGGCCTCCCTGGAGCAAGGACACACCGCACAAGTCCTGGACATCATCAAGGATGACAAAAACAAGGAGATTGTGCGGTGTATGGGGTGGAATCTGCTGGGTCCCCTGGTGCAGCTCATTTTAAAGAAGGAAGAGGGGAGCCTTCAACACTGCCTGGCCATCTTCAGCAACATCATGGACGTTTGTAGCCCAAAGGAGCTTCTGGTTGGTCTACTTGAACAGGTTGAAGATGCAGATGCCGACAAAATAGCAGAGACTGTCTTACTTCTTCTACAACCCCTACAGACAGTCCTCCGCACACTGGGCAAGAAGAAGGCATCTTCGGTGGGCATGTCTCTGTCCACCATTCTCAACCAGCTGTCCCAGCTGCCCGTGCCCTACACCCAAGAGCAGGAGGAGGACGACACGTACGGGCTGTGCCAGTGCTGTACCGCCCTGCTGGGCTTTGTCGGACCCTTCGTGGAGGAAGTGAAGCAAGACCAGCTCAGCCCAGACTGCGGCGAGAATGAGCTGCGGACCGAGCTGCTCAAATTCTGTATGAAGAGTCTGGGAGAGCCTCTTCTCCAGGCCCAGCTGAGCACAGACCTGGACTCTCCCGACAGCTCTCCTCTGAGGCATTTTGCCACCGAAATCCTGGCGATTCTGTCCAACCTGGGGGAGTCCCTGCCTGGACTGCTGCTCCATCACCTCCTGAAGAAGAAGGAAGAACCGGGCTTTCTGGAGGAAGATGCCAAATACCCCCGGGAGTCTCTGGCCTGTCTGGCGTACCTATTATTCGTCCAGCACATCGCCATAGAGAGGTTCCCTGCAGTGTTCAGGTACAACTGCAGCCCGTTTCTCCTGTGCTGTGAAGGTTTTTTGACAGAAGAGTCTCGGCTCTCCAAAGGAATGGAACTGTATGAGAAAAGCCTGGTTAGGACAGAAAATAACAGCCTCCCCGTGGATCTTCTGGATTTAAAGTTCTTTCTCACGGTGCCACAGAACTTGGTGAAGGTCATGACTTTATGTCCAATTCAGCATCTGcgAACAAAGGCACTTGCTGTGTTTCAGCTCAGCATAGATAAATTTGATACTGAGGCCAAATATAAGTTCTTCAGGTGTCTTTTACGGACGAGTCACCATGCAGGAGTAGAAGGCTACATCATTAAGAACATCAAAAACCAGATCGACTACGCTCTTCAGCCAGGGAACAGCAATGTGTGGTTCTCGGGAGCACAAATGCTTACCCTGCTGCGTTGCATCCTAACGCTGCCCGAAGGACCTGAAACAGACCTGCTTCAAAACCTAGACAGGATCATGGAGTCTCTTAACCTTCTCAGATTTTTATTGATTAGGGACAAGGAGTGTGACAATCAAACCGGGGTATGGACAGAACTGTACAAGATTGAAGAGAACTACCTGAAGCCTCTCCACACGGGGCTGAACATGTCCAGAGCACACTACGAGGCCGAGCTCAAGAGcaccaaagaaaataaaaagttaaaagGGTCTGCAGAAAGCAAGTGCACAGTAACAGTAGGCAACGAAACGCTACCCAACATGACGCCCGAGATGCAGCTCCAGGTTCTACACTCTGCCTTGTTCACGTTTGATTTAATTGAGAGCGTCCTGGCCCGAATTGAGGAGATCATCGAGGTGAAAGTAAAACCCTAG

Function

GO: NA

KEGG:

id description
K23345 GLMN; glomulin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU181271 lncRNA downstream 260819 9140619 ~ 9141972 (-) True G144142
TU181252 lncRNA downstream 481638 8916491 ~ 8921153 (-) True G144124
TU181182 lncRNA downstream 873884 8527531 ~ 8528907 (-) True G144072
TU181007 lncRNA downstream 1544079 7857350 ~ 7858712 (-) True G143922
TU180909 lncRNA downstream 1676626 7722188 ~ 7726165 (-) True G143860
TU181346 lncRNA upstream 7082 9417532 ~ 9418417 (-) True G144205
TU181347 lncRNA upstream 10052 9420502 ~ 9420880 (-) True G144206
TU181349 lncRNA upstream 29276 9439726 ~ 9440310 (-) True G144208
TU181350 lncRNA upstream 30850 9441300 ~ 9442501 (-) True G144209
TU181395 lncRNA upstream 136753 9547203 ~ 9548406 (-) False G144241
AMCG00004912 mRNA downstream 115305 9281194 ~ 9287486 (-) True AMCG00004912
AMCG00004911 mRNA downstream 134570 9225651 ~ 9268221 (-) True AMCG00004911
AMCG00004902 mRNA downstream 250344 9139161 ~ 9152447 (-) True AMCG00004902
AMCG00004901 mRNA downstream 326705 9072340 ~ 9076086 (-) True AMCG00004901
AMCG00004894 mRNA downstream 555016 8836770 ~ 8847775 (-) True AMCG00004894
AMCG00004917 mRNA upstream 21927 9432377 ~ 9457795 (-) True AMCG00004917
AMCG00004920 mRNA upstream 66387 9476837 ~ 9515322 (-) True AMCG00004920
AMCG00004919 mRNA upstream 142615 9553065 ~ 9558253 (-) True AMCG00004919
AMCG00004922 mRNA upstream 346777 9757227 ~ 9760024 (-) True AMCG00004922
AMCG00004931 mRNA upstream 432468 9842918 ~ 9847710 (-) True AMCG00004931
TU181238 other downstream 496197 8872885 ~ 8906594 (-) True G144115
TU181227 other downstream 561803 8836360 ~ 8840988 (-) False AMCG00004894
TU181155 other downstream 1025790 8353989 ~ 8377001 (-) True G144050
TU180667 other downstream 3619607 5736809 ~ 5783184 (-) True G143659
TU180357 other downstream 5286377 4113747 ~ 4116414 (-) False AMCG00004819
TU182156 other upstream 2743675 12154125 ~ 12156378 (-) False AMCG00005011
TU182157 other upstream 2743675 12154125 ~ 12156378 (-) True AMCG00005011
TU182413 other upstream 3925759 13336209 ~ 13336746 (-) True G145046
TU182803 other upstream 5554129 14964579 ~ 14967623 (-) False AMCG00005077
TU183873 other upstream 9604097 19014547 ~ 19015663 (-) False AMCG00005214

Expression Profile