RNA id: AMCG00004923


Basic Information

Item Value
RNA id AMCG00004923
length 2466
RNA type mRNA
GC content 0.43
exon number 3
gene id AMCG00004923
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 9653584 ~ 9658003 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTTATATTTCTGTCGGGGTGGCGTCTGACTGCAGCTCCATGTGGCCGCCCTGAGACTCGCACCCGGATGTGGAATTAAATCCTGCGCGCTGCATTGTGGGGCAGCTTCCGGGGGAGATTAGAAATCCTGCTGCACCGCTGACACTGTGGACCAAACAGTACAATTAATTAGAAACGCGTTTAACTGCCTTTGGATTAATGTTATCAGCTTGAATGCCTACAGTTGTACCGGATAAAGGCCATCTCCTCCAGAGAGCGGGACGAACATGTCGCTTAAACCGGTCTGAAGAGGGTGGAGACTGTACACATTAATAGCGACTGTAACTCCTGCCTGGAGAGCAGCTGCTTTGGTTTTTGCCTTTCATTTCatccccccttttttttgttttgatgataTTTCACAGTGTATTTTGGCGATCGTTTGGGATACAGTCGCATTTATGTAAGAGGGACATTTGTTTACTTCGAAAATCGACAAAGACCTGGGGCTCCCCTCCTCTATAGCTAGGCCGCTTGGGAagccagtgtttgtgtttggttgttgttttatatctCCCTCTATCCTTTGAATAAAATCAGCAGCTCGATCAACCATGGCTTCTTCGTCTGGCAACGATGATGACCTCACTATACCCAGGGCAGCCattaataaaatgatcaaaGAGACTCTGCCAAACGTCCGGGTGGCAAACGATGCCAGGGAGCTGGTGGTGAATTGTTGCACGGAATTCATCCACCTCATCTCCTCGGAGGCGAATGAGATCTGCAACAAGTCCGAGAAGAAAACCATTTCTCCAGAGCACGTCATACACGCACTTGAGAGTCTGGGCTTTGCGTCCTACATCACCGAGGTAAAAGATGTGTTGCAAGAGTGTAAAACAGTGGCACTTAAAAGGAGAAAGGCGAGCTCCCGTCTAGAAAACCTTGGCATTCCCGAAGAGGAGCTGCTCCGACAACAGCAGGAGTTGTTTGCCAAGGCCAGACAGCAGCAGGCCGAGCTGGCCCAGCAGGAGTGGTTACAGATGCAGCAGGCGGCACAGCAGGCCCAGCTGGCAGCAGCCTCTGCCAGCGCGGCGCACCAGGCCGGCTCCTCtcaggacgaggacgaggaggacGACATGTGAGCGCTGCAGGCTGTCTCTGGAGTCGGCACCGACCGCCCCCtacacccaaacacacactcatCTCCTGTGTGGGCTGGTGGGCTGGGGAAATGACAGAGTTGGGACCCCTCTGTCTGTCAGTGAAGTCCAAACATGTACTGTTTCcaattcaacttttttttttttttttgtctttggaTTTTAAGCTAGCTTTTTCAGGGAAGGTTATCCTAGCTGTCATCCTTTTGTCTGctctttcatttttatgtttatataaccTCTCTCCAATACATAGTCCTATAAAACCTGACAAGTTTGGCTAAGTTCGCTTGTGCTTTCAGAGCACTCGTCATCTCATCTCTTTTGGCCTcctcccttttctttctttgttaaaCGCAGTACAAAGGTTTTGTTATAGAAGTCTGTAATGGTACTTGTGTCAGTTGAAAGACCCTGTTTTATTAACAACAAAGATGTGCACATGATTTTGTTTGGCATGTATGGTAGAGCACATTCACATTCTTCAGGTATTGAACCCCTTTCAGTTCattagcttttttatttgtttagtttttttgccttTGACAATTTGGAGTTATTTTTGTCCTCATTACTTACTGATGTTAGTAATGCCaattcaaatggaaaaatatgtacatatattctTCCCATTATTGATCATTGTAATACACAGAGCTTCACGTGGAAGAGAACTTGAAGATGTGTTTtgctgtataaaaaaaaaacaaaaaaacaatacaaatggtGACTTGGTTATTTTTaggtacttttttgtttttcggtCATACTATGGTGCAAGTAGGTTTTGGCGTTTTTAATGGAACAGTATTGCAGTTCACATTTACTGCTAATGGAAAGTAAAGCCTAAGGACACAAAGGAATTGCTTTCATCCTGTAGTACCAAAGAGAGAATTTCCCTggcaagaaattaaaaagctgGATTTAATGTGAGATATTCTGGATTTTCATGGCATAACTTTCCATGTATTAAAATTCTATAAAACTAAAGGTGTTTTTGTGTAGTAAGTAAAAGGAAAAATTGTAACTTTCACCTTgaaaattgttttagttttgataCCTGAGGATGCAGATTTTTTTCgggaatttgaaaaaaaaaaaaaaaagtgtaaaacctGCATTTGTGAATGTGTGGTGCATTAAAGCAAGTGATGATTGGTGACTTCTAATGGTGATTTCCTGTTCTCATGCCTTTTCACAAGCTGTATTCTCTGAGCAATAAAATtgacatgttttataaaaagtGGCGTGTGTGTTCAGTCAAGTGTGATTTTGACATTAGTGTGCTGATGGCACGCCCCCGTATTTCCTGATACTTGGTAAGA

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG:

id description
K21751 DR1, NC2-beta; down-regulator of transcription 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU181382 lncRNA upstream 96109 9554100 ~ 9557475 (+) True G144237
TU181368 lncRNA upstream 152606 9494496 ~ 9500978 (+) True G144227
TU181359 lncRNA upstream 186971 9464141 ~ 9466613 (+) True G144218
TU181351 lncRNA upstream 205051 9447589 ~ 9448533 (+) True G144210
TU181336 lncRNA upstream 209690 9443656 ~ 9443894 (+) True G144195
TU181455 lncRNA downstream 42164 9700167 ~ 9750777 (+) True AMCG00004921
TU181492 lncRNA downstream 185426 9843429 ~ 9847756 (+) True G144315
TU181493 lncRNA downstream 185426 9843429 ~ 9847756 (+) False G144315
TU181495 lncRNA downstream 185426 9843429 ~ 9847756 (+) False G144315
TU181537 lncRNA downstream 290407 9948410 ~ 10015424 (+) False AMCG00004935
AMCG00004928 mRNA upstream 2521 9647466 ~ 9651063 (+) True AMCG00004928
AMCG00004927 mRNA upstream 7172 9632837 ~ 9646412 (+) True AMCG00004927
AMCG00004925 mRNA upstream 34795 9594021 ~ 9618789 (+) True AMCG00004925
AMCG00004926 mRNA upstream 60390 9583401 ~ 9593194 (+) True AMCG00004926
AMCG00004918 mRNA upstream 99955 9547228 ~ 9553629 (+) True AMCG00004918
AMCG00004924 mRNA downstream 5320 9663323 ~ 9684123 (+) True AMCG00004924
AMCG00004929 mRNA downstream 27514 9685517 ~ 9688791 (+) True AMCG00004929
AMCG00004921 mRNA downstream 88537 9746540 ~ 9747555 (+) False AMCG00004921
AMCG00004930 mRNA downstream 105516 9763519 ~ 9779724 (+) True AMCG00004930
AMCG00004932 mRNA downstream 190581 9848584 ~ 9888182 (+) True AMCG00004932
TU180912 other upstream 1922584 7729389 ~ 7731000 (+) False AMCG00004870
TU180621 other upstream 4229463 5423703 ~ 5424121 (+) True G143626
TU180426 other upstream 5281495 4371709 ~ 4372089 (+) True G143471
TU180351 other upstream 5543929 4109022 ~ 4109655 (+) True G143404
TU180311 other upstream 5703747 3949426 ~ 3949837 (+) True G143366
TU181952 other downstream 2004678 11662681 ~ 11663368 (+) True G144677
TU182286 other downstream 3122577 12780580 ~ 12781170 (+) True G144940
TU183002 other downstream 5726240 15384243 ~ 15384612 (+) False AMCG00005105
TU183561 other downstream 8107254 17765257 ~ 17771525 (+) True G145932
TU184056 other downstream 9921570 19579573 ~ 19579807 (+) True G146305

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00063863 True 961 mRNA 0.49 4 NC_007117.7 24056667 ~ 24066659 (-)
grasscarp (Ctenopharyngodon idella) CI01000340_00739436_00741531.mRNA True 1668 mRNA 0.43 3 CI01000340 738405 ~ 741637 (-)