RNA id: AMCG00004924


Basic Information

Item Value
RNA id AMCG00004924
length 4544
RNA type mRNA
GC content 0.44
exon number 12
gene id AMCG00004924
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 9663323 ~ 9684123 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGGAAAGCTGGAAGGCAGTAGAGAGCCAGGCAGACTCAATCTCGGCTGTGGGCTGGGTGGATGTGCGAGCTTTTCTGTCCGAGTCACCTCTCTCTGATTTAAGTTTGCATCAACTTTGAAACATGGCCGGGGCAATTATTGAGAATATGAGCACCAAGAAGTTGGTTATAGTCGGAGTTATCCTGCTGATCTTCCAGGTGCTTTCCTTCCTTGTTGGGGGTTTGATTGCTCCAAGCCCCACCACTGCTGTCCACTATCTGGCGACGAAATGCGTGGACAACCGCAAGCATCTCCAGAGGACCAAGCTGTTCATGCCCTGGGGCCCCAACCAGTGCGAGAAGATCCGTGACTTTGACGAGGCCATGGGCAAGCAGATTAAGGCCGATGACATAGTCTTCGCCGTGCACATGCCCATGCCCAATAAGGACATGAGCCCCTGGTTCCAGTTCATTCTGGTCATCCTGCAGTTTGACATCGCATTCAAACTTGTCAACCCCATTGAAGAAGGAGCTATTGCCACAATTGACGTCAGTCTAGCTTTCCGTGACGACACCTTCAGTGAGTGGACGGAGATGGCCCACTCCATAGAGCATCGCAAACTCAGCTGCATCTTCTCAACAGCCAAGGTCCCAGAGAACGAGGGGCGCCACTATGAGTGTGATCTCTTGCCCTTCATGGAAATGGGCAGTGTGGCACACAAATATTACCTCATCAACATCCGACTCCCAGTGAACGAGAAGAAGAGGATCAACGTGGGCATTGGAGAGATAAAAGATATCCGCCTGGTGGGCATCCACCAAAATGGTGGTTTCACAAAAGTGTGGTTTGCCATGAAGACTTTCCTCACGCCGAGCATCCTCATCATTATGATCTGGGTCATATTTGCATTGGGGATTTCCATGACTTTCATCAATATCCCAGTGGAGTGGTTTTCAATTGGGTTCAACTGGACTTGGATGCTGCTTTTTGGAGATATCAGGCAGGGCATTTTCTATGCTATGCTCTTGTCCTTCTGGATCATCTTCTGTGGAGAGCACTTGATGGACCAGACCCAGAGGAACCGCTTTTCTGTCTACTGGAAGCAAGTGGGCCCCATTGTGTTTGGCTCGTTCTGCCTCTTCATCTTTGACATGTGTGAGAGGGGGGTCCAGCTGAAGAATCCATTTTACAGCATCTGGGCTTCAGATGTGGGGACGGAGCTTGCTCCCAAGATGGCCTTCATCATCGTAGCGGGGATCTGTGCCTGCCTGTACTTCCTGTTCCTGTGCTTCATGGTGTTCCAGGTGTTCAGGAACATCAGTGGGAAGAGGTCCTGCTTGCCTGCCATGTCCAAGGCCAGACGTCTGCACTATGAGGGCCTAATTTTTCGTTTCAAGTTCCTGATGTTGGTCACCCTAGCATGCGCTGCGATGACGGTCATCTTCTTCATCATTAGCCAGGTGAACGAGGGCCATTGGCACTGGGGGAACTACACCGTCCAGGTGAACAGCGCTTTCTTCACGGGCATCTATGGCATGTGGAACCTGTACGTCTTTGCCATCATGTTCCTCTACGCACCGTCGCACAAACAATACGGAGACGAGCAGTCCAACGgtgatCTGGGAGTGAACAGCGGGGAGGATGCCCAGCTCACTACCACCATCACACATGTGGACGGCCCCACGGTGCTCTACAAGATGACCGGCAAAGAGGCCCAGGAGTAGCCCTTCTCACTGCAGTCCTTCTTTCCCCTCATATCTTCAACATATTTTATCCTCGCATTCAATGACTCATTTAAAAGGTGTTACACCGATGTATCCACACACTTCTCAAACAAAGACCAGTACTGTAATAGCCTCCCCCCCATCCCACCACCATATCAACCAGTGTTACCCATTTCAAatcttcctttcctttctgaGGTGGCTGCCCTTCAGGAAATTCATactaaacttttttaaatgttatggtCACAACTGAGCACTAATTTTAGAGGGTTGAAATGGATGGGAGTATATTGTGGGTTGAAAGTGGCGAGGTCTAACTGAATTTCAGAGCTGAACTGCAATCTTGTGTCAAGTTGTTTCGCCCCAAGCTCCTGCCTGTCGCTCGTGGGGAGTGAACTGGAACGGCTGAATTGCTTGTTGAAGACTGAAAACGAGGGAAAGGGGATGATCTGAGAGAGTCGGGCTAGCCCACCTTTAGTTTTTTGTGGCAGTTACTGACCACTTGGAGGAGCTGAAGGTGCGACTGTCTAGTTGTTTAGTCCTATGCATGAAAGTCGTGTGGTACCTGTACTGCACaacatgctttaaaatgacCACTTTTTGAAACTAAAATTTTTGTCCCAGATCACATACTTGTAAAGCAAACTATTTGTTTCCTATTTTTCACACTccaaataaaagcaaagcaatcTGACAAActccaaacaaacaacacacagaaaaacttgttttgaaatggaaaacgtTTGTGCTTTGGACTTAAAGCCTCCTAAGAACatttaactttatattttaaactactgAGTTATTTAACTGTCtttcacatatttaaaacatctaATCTCCTTTTCAAAAGCCGTGACGTTCAGATGCGAGAAGCTTTGATAATAGGCTCAAGTGGGTGTTTGCAGGTCACAGTCGGTCTGTATAATAAAATCCTAAGTCCAGTATGTTATGATGtagatatttttgtatacagTGCTATTTTGTAAGTGTAGTGTCAGAtcttttatttagttatatGCCAAGCGTCACAGCTTTAAGCTGAGATGATTGTGGATTGTTGGGTAACTGAAAGTTATCTTTTCAAGATGTTACAAGTCTGTGTTACACAATTGAGTATGTAGATTTGCTTTTTAtgccaatttaaataaaattcttTTACTTgatatggttttttttttctttctctctctgttgaaTGCTGTAACAAGTATTTAGTGTAATGAATACTTCTCTGAATGTGAGGCACCATAACAGTGTCCCACAGGGGTGGTAATGTTCAGGCTAATCTCCGGGATATAACAAGGATTTAACTGTGGCTTTGTTAGCAAAAAGATTGCTTTTTGTTAGAAGTTCTTTGAGTTTCAGTTCTCAAATGCCCACGACATCCACTGCTATAAGAAAATCTTCAAATTTCTCAAGGAATGGTCATTACTAATGTGgtctctgtctcttttccttttttggagGATATTGTTTGTGTTGCTATTTGCACCGCACTATTCCGAGTGACTGCATCAGAGTAATGTTTGGGTTATGTTACGTTGAGCTTAAGTTGAGCACATTATTTTTGTGGATATGaaatgctgcatttttttttttttaaatgcagggaTAATTTTGTTTGAATGGGGTGCAATGGTAAAAAGCCTTGGCAAATTGTTTGTGGCAGTAATAGGAATGGACACAAATGTAGACAACTTCATTAAGGAAATGCATTGCCGGTTTAAAGTGAAACccgtttctttatttttttctgttctttttttttgggtggcttttgtatttaatcccCCCCCACTTGTTTTGGTATAGTCCTCAACCATTAGCACATTGACACTGTTGCAGCTGAACACTATACAATACAGTGGCGACACCTTGTGGTGATCATTGTGCTCATGGTCCATTCAAGCAGAGAATAATCTGAGTTTCAAGGCGTCTTTGTTTACACTGTGTATACATGAAGCATGGGCCTCCATGTGCTCATCTGTGTGCAGCACCAGCCCCACGAATATCTCCAATGGGCGCAATCAAGATGATGCTTTTCACAGATCTACTGTCCAGGCTGCACAGACCTCTCTACACCTCTGTTGCATCCTCTCTGCACTGGCTGTAAAAGGCCACAAGTTGCTGATGGCTGTGTGCATAAATATACCACTTGTGCAGACATGAATTCAGCTGACAATCCCTCATGGCCTTTAGGATCATGTATCCCTTGTTTACACTAAATTCTTGACTTTATTTTCCACAATTGCCCTGTATCTTGGCTACCCTTCGAAGGCAAAGACTGCATCGATGAGCAGAACTAAATTCGTGGGCGGTGCTTCTAATTCCACTTTAACAATGACCAGTTCTACTTTTTATACAAAGAAGACGGAGGTTGTAACGGCAATACTATGGGAGAATGGGGCCTATGCTAATTCACAACTTCTGATGGTGTTTATAGGTTGGTGGATTCTAATGGATTAGGTAAAGTTTGGTAGAACGTTATTACTCCGGGAACATTACACATTAACATTTGCTAAAAAAGCAACCACACAATGcaggacaaattaaaagaaatgggaCTCTGGTATGTTTTGATCAGAAAGCTTTATCATTGACTAGTTTACAAAGCATTCCTTATTATATTGCTTCTAGTGagtcatgttgtttttgtctaaAACTCCCAAGTCTTGTGTATGTTGGTCTATCTTCAGCACAATGGTTATGTAACTTACAGGCAACTCATGCTCTGTGAATGAATTGCTAAAAAAGAAAGGGCTTTTagtattttttcaaaatcatggacatgtttgtgtgtttaggatttaattaaaacttgctCAAAGCTTC

Function

GO:

id name namespace
GO:0016055 Wnt signaling pathway biological_process
GO:0017147 Wnt-protein binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU181382 lncRNA upstream 105848 9554100 ~ 9557475 (+) True G144237
TU181368 lncRNA upstream 162345 9494496 ~ 9500978 (+) True G144227
TU181359 lncRNA upstream 196710 9464141 ~ 9466613 (+) True G144218
TU181351 lncRNA upstream 214790 9447589 ~ 9448533 (+) True G144210
TU181336 lncRNA upstream 219429 9443656 ~ 9443894 (+) True G144195
TU181455 lncRNA downstream 16044 9700167 ~ 9750777 (+) True AMCG00004921
TU181492 lncRNA downstream 159306 9843429 ~ 9847756 (+) True G144315
TU181493 lncRNA downstream 159306 9843429 ~ 9847756 (+) False G144315
TU181495 lncRNA downstream 159306 9843429 ~ 9847756 (+) False G144315
TU181537 lncRNA downstream 264287 9948410 ~ 10015424 (+) False AMCG00004935
AMCG00004923 mRNA upstream 5320 9653584 ~ 9658003 (+) True AMCG00004923
AMCG00004928 mRNA upstream 12260 9647466 ~ 9651063 (+) True AMCG00004928
AMCG00004927 mRNA upstream 16911 9632837 ~ 9646412 (+) True AMCG00004927
AMCG00004925 mRNA upstream 44534 9594021 ~ 9618789 (+) True AMCG00004925
AMCG00004926 mRNA upstream 70129 9583401 ~ 9593194 (+) True AMCG00004926
AMCG00004929 mRNA downstream 1394 9685517 ~ 9688791 (+) True AMCG00004929
AMCG00004921 mRNA downstream 62417 9746540 ~ 9747555 (+) False AMCG00004921
AMCG00004930 mRNA downstream 79396 9763519 ~ 9779724 (+) True AMCG00004930
AMCG00004932 mRNA downstream 164461 9848584 ~ 9888182 (+) True AMCG00004932
AMCG00004936 mRNA downstream 254298 9938421 ~ 9941239 (+) True AMCG00004936
TU180912 other upstream 1932323 7729389 ~ 7731000 (+) False AMCG00004870
TU180621 other upstream 4239202 5423703 ~ 5424121 (+) True G143626
TU180426 other upstream 5291234 4371709 ~ 4372089 (+) True G143471
TU180351 other upstream 5553668 4109022 ~ 4109655 (+) True G143404
TU180311 other upstream 5713486 3949426 ~ 3949837 (+) True G143366
TU181952 other downstream 1978558 11662681 ~ 11663368 (+) True G144677
TU182286 other downstream 3096457 12780580 ~ 12781170 (+) True G144940
TU183002 other downstream 5700120 15384243 ~ 15384612 (+) False AMCG00005105
TU183561 other downstream 8081134 17765257 ~ 17771525 (+) True G145932
TU184056 other downstream 9895450 19579573 ~ 19579807 (+) True G146305

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00031940 True 2545 mRNA 0.46 12 NC_007113.7 10342177 ~ 10386738 (-)
grasscarp (Ctenopharyngodon idella) CI01000004_03378562_03405135.mRNA True 2435 mRNA 0.45 11 CI01000004 3378562 ~ 3406001 (+)