RNA id: AMCG00004930


Basic Information

Item Value
RNA id AMCG00004930
length 5809
RNA type mRNA
GC content 0.46
exon number 25
gene id AMCG00004930
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 9763519 ~ 9779724 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTCATACGTGGCAAGGATGTGCTTAGATTCAGAAAGAGCACAGAACTGTACTTGGATACTGTaacattgataataataataattataaatacagcagGAAATAAGGTCCTCCGACGAAAAAGaagacattcaaataaaatgtagaaaaatCAGGGGAGGAGATGGCCTGACTTGATGGGATTTATGAAATGATTAAATCAAAGATGACAAACCGCTTCGGAAGGGAAACAGCTATGGCCTTTATCATACAGAGGAGAGGAAAAGGTGCTCACTTTAAGCCTTGTCCCTTCTGTGGAGAATAAATGGGTCTtggaaaatactgaaaacagaTAAGGGAGGGAAAACAGGATGGATCCCAGAGGCTATCCGTATGGGCCTGAACCTGCAGCCCCCCAATATTACCCCCAGAGACCTGCTTCCAGAGCAGATTACCCCGACAGAGATGCCTATTACAGCAGCAGGCCTGGCCACTATGGGGACATGTACTACCCCCATCCGGACTCCAGAGAGAAGCACTGGACACCAGCCGACCACAGGCCGAGACCCCATGTTACCAGCCCTCCGCCCCGAACTGATGTCACCCCCGTTTACCAGAGCAACCCTGTGTTTAGAGCAGGCTACGGCCCAGACCAGCCACTTGGCCTAGCACATTCCAGACATGGTTACGACTACCCTCGTCAGAACTACCCTGCTTGGGACCCCAGAGAGGATTATGGGTACTATGATCGAGGCTACCACAAAGGGCACCGCCGACACCCGGAGGCTGACAGATGGACTCCCAATATCCCTCAGCAAGATTACTGGAGGCAACCTCCTTCCCAGGACAGAAGATATGAGCAGGACTGGGCCAGTCCTCATTACATAGAGCCTCAATCCAAAAGatATGACCCGTTTTCAGAAAGTTCTCAGTATGACTATGGCACTCAGGCGAACTTCCAGAGTCCCAATGGAGACAGCGCGCAGGAGAACGGAGATAGCTTCGCAGAGCTATCCCTATATGAATCAGGAGGCCTCGCTCGCGCTAAGGCTTCTGGGTTGTCGTCGAGCGGCTATGAGCTCAGCCAGTACATCGACAGCACCGAGCCGAGCGACCTGCCCCCACAGTCTCTCTGGAGCTCTGCTTACACAGAGAGTGCAGAGGTCCCTCAGCTCGCTGCCCCCCTGAAGTTCTCCCTCCCTCACGTGCGGGTGGGATTCGGGCCGGGGGGCCAGCTGCTCCGGGTCAGCCCCAGCCTGCCCACACAGGGGGAGCCGGCGCTGGTGGAGATCCACAGTCTGGAGGTCATCCTTGTTGACACTCGGGAACAGGAGGAAGTTCGAGCCTTCCCGGGACCTCTGACCAGGGAAGATCTCCACAAGGTGGACGCAATAAGCTTTGCCCAAAACCGTGCAGACCGCTGCTTGACAGATGAGGCCCTGCAAGACAAGGCCTCTGCTGCCCTCCTGTGGAATCTGCTTGTACTGTTGTGTCGGCAGAACGGAAGGATCGTGGGCTCAGATATTGCCGAGCAGCTGCTGAGAGATCACCGGGCTCCGGGGCAGTGTGCGGGGGAGCTGGGGGATCCGGGCACTGCGAGTCTCATAGATCTTAGTGAAGAGGGCACTGTGATGGGCGGCAGCCTGGATACCACTGACCTGCTGACTGGGGAGATCACACACGGCACAGAGTCCCGCGAAGAGGCCCTGGGAAAGTACACCAAGCTCCTGCTCTCCGGGAGGAAGAAGGAAGCCCTGGAGGCGGCGATGGGAAGTGGTTTGTGGGGGCATGCTTTATTCCTGGCCAGTAAAATGGACAACCGGTCTTACACTACAGTGTTAAACAGGTTTACAGGCTCTTTGGCTGTCAATGATCCTCTGCAAACGCTATTTCAGTTGCTGTCGGGGAGGATTCCTGCTGTGTCTACGtgctgtgggAGTGAGAGATGGGGTGACTGGAAACCTCACCTGGCTGTGATCCTCTCTAACCCGACCGGAGACGTGGAACTGAACCAGAGAGCAATCACCACCATGGGCGACACGCTGGCCACAAGAGGACTGATAGATGCTGCCCATGTTTGCTACCTAATGGCACGTGTTCCCTTCGGTGTTTACACTGTAAAGTCCGAGAAGCTAGTTCTTCTGGGTAGTAACCATTGCTTGCCCTTCCTGCAATTCACTAAAAATGCTGCTATCCAGTGCACAGAAGTGTTTGAGTACTGCCAGCTATTGGGTGACCCTTTTTTCTTAATTCCCTCCTTCCAGgtGTACAAATTCATCTACGCGTGCCGCCTGCTGGACTATGGGCTGGCGTCCCAGGCCTTCCATTACTGTGAGGTGATTGGGAAGGCCTTACTCAAGCAGGATGTCCTCCCTGCTGTGTTGGTGGGGGAGCTCATCAAGTTGGCACAGAGACTGAAGCTCTCGGACCCCTTGTTCAGTGACGGGGCAGTGGAGGGGCAGACTGGGGACCCCAAGTGGCTGGCACAACTGCAGCTGAGACACCTCAACCCACAGatGGGGAACAATGGCTGGTGTAACAGAGACCAACCACCTGCTGATGAAAGAACTGCCCCACAGGAAGAGAATGGAATAAGCACAGACCATACTGTGCGTGACCAGATGTTCCTGACAGGAGCGATGACACCTGAGCTGCCAAGGCCTGGGCCAGATGTGCAATACCTGCAGCCTCTCACAGTGGCTGATGGACATTGGCAGCAGCCTCCTCCCCCCTGGACTCAGGAGTACCCAGCCGACCCTCCCCAGACCGCTGCAGCGCCCAGCCCGCCAGGAGCTCATGGGTACCCCTTCCAGGTCCCAGATGCCACATATCCACACACCTCCGCGCTGGACTCAATCTCTTCTGACCAGTGGCCTCAAGGTATTGAAATGCAGTCAGGAAATATGACGAGTGACATGCATGTGAGCCAGGCAGGACCAGACCCTGATGGGCAGAGTGAGGCCAGACTCCAAACAGCTGTGGAGCAACACGGTGGAAAACCGCAAGAGCAGGGCAAGTCTGAGGATaACGCTAAATCTGGCTGGTTTGGCTGGTTTAAGTCCAAACCTGCAGCCAAGACAGAGAATAAAGAATCCAGAAAGGATGACCTAAAAGACACTGATAATGTCAGCTGGCAGGACACCTCTGCCCCGCCCCTGCTCTCTCCTCCACCACGTCCTCCTGCACTTTCTCAGGCTGCaggccccccaccccctcagcCAGGGGTCAACCCCTTCTCCAGATGGGCTGGTCCACCAGAACTAGGTTGCTCAGGACTAACAGAAAATGATGACCTGAAAGATTTTAATACCTAGAGATGGAATTTGATCTTCTCAAGGAACCTCAAAGGACCTCACTTATAAACACTGTCCTGACTTCAACCCTGGAGCAATATTATCTTCTAAGAACAGCCGAGTGACCTCCTGCAGACACATGCAGTATTTCTTATACACATCCACACAGTCCTTCTGACTGGGGTTGCTGGCAACCCAAAAGTATAGCATTTGAATATccactttaattaatttttagaaaaaaacaacaacaaagaaaacaaatcttgcACTTGGTAgttgtttaaatatgaaaactgaTATCACTttctgtaattgtaatgtaGCTGAATGTGACACAAGAGGACTTGGTACACATCAATGCAGGTTTCTATGCACtgcttccattttgttttgtatcaggGAATAACAGCTCAGTTATCACACAACTGTGTCACAACATTTCACAACATTGCTGTAAGGTTGTAGTTTGTATGTGGCCGACATATGGTTGTAACATACAGCGTTTTTGACTAGTGAAGTTGCAGAAACATAAGAGCCTTATTTTGTTCTGACAGTGTTGTACTGATGTATCTTGGTGTCTAGACATTTATGTTGtccaaatgtaattttacataaaCAGAAGGTTGTGCCAGCCTGATCACAGTGTtcaattgtaatttaattgtaatgatcCCTCAGGTCTGTGGAGATCTCAGACAGCGTCATGCACACCCTTTTATAGAAACCGTGACGTGTTGTCTGAGATCAGCACTGTTTGAAAcagaacacaaatggaaattgggcttcaaggcatgcaagacagaaaacaggagacgttTCTGcacacagaggcgtcacaatctgaacaaactccccagcgatgtggctgaagctgaaaatttgggaacatttaaaaacagactggataggatccttggatcacttcattattaatggacaccagatgAGCACGATgaggcgaatggcctcctttcgtttgtaaactttcttatgtttttataaaccCACAGTCTAGTCATTATTGAAGTTCTCACTTGCACTAGTGTTTATTCATCTGGAAATGTATACGTCTGTACTGCCATTTATCTTGAATCGTATTTGTACGATGAAATGCTGACCAGCTGTGGTCTCCAGTCTTGGTCATTCAGATTTCATTTGTCTTCTAGCAGTTGCTGACAAACTGGTCGCTGAATGATTAATTATGCTAACAGACGGTCAAAGTAAGTAAGGACACACTTATTTGGAATGAAACCCTGAAGCTCTCTAGGACTAGTGCTCGAGACCCCTTTTGGACAGTTATGTTATGCTGTTCTGACCTATTCTGACcattaaaacataaactgtTAAACAATTCTTTAGTTGCACTCATCTGAATCAAATGGTGTATCTCCATGATTGTATAAGTGCAAAAAAATGGTAAAAAGGTACTCAAAATCTACTGCGACAATGACAGTGTTATATACGTGTATAGTTCTTGACAATCAGCATGTACCAGAAGTATATTGCCAAGCTAAAACTAGAAAGTATTTAAGTGAacttttttaagataaaaaaatgtatatgtataacatacacacacagctgtgtatcTGGAtatcagtttatttgttttgaacattAAGGGAGTAGCAAGTACTTCCGGTTGCTTTCTGCattgattttggtttatttacctaattgtattcaattaacacttttttatttgttgggACATTAATGATCAAGTTTATATATAAGTTCAATATGAAACAGTGTTATGTATAATTAtgtgttgcctttttttttgtacagattGGTCTGAtagattattttactaaatCAAAGCCCTTTTAATTATGCCAAAGTACTTTCTGATTAGCAAATCTCCTTTTACCATTACTCGGCAGATGCTTGCATTGCTTCTGGCAGGTTTATTCTGGAGGGGTTTGGCAGAGTTTGCAGCATGTTGGCTAATACCCAGCTCTGTGCCCGCAGCCTCTCACATTATAGTCCTATTAGCAGGATTCAATTTCCTTCGCCTGAAACGACGCTGACATTCAGCACTTAttaattgtgaaaaacatgttttttccaaTGTATTCTGaagtttttttaagttttttattattttcagaaaacagatattcaagctttttaaaaatgtaataaatcatacatttaagaCATTTATGTGGTTTACCTAgacaaaaatgacatttatacaaTCAGTGTTGGTGATTCCTGTgttgtcctttaaaaaataaaaaaggttttatattggcctaaatgtatttacaaaaaaatattatatttgaaaaaattaCTGATGGACTTGCAGAAACACATATTCTGACCTGACCACTTTTCAACTGTCTAAcccatttatttgtaattttctgaAATCTTACCCGATGAGATACTGGATCCAGATTTGGAAACCCGGCCTCTTGAGCCTGTGTATTATCCCATTAaatttgcttatttaatttctgtctttTAATGTGCTATTTTGTAAGAGAAACTTGAAAACCTTCAATAAATTATCTTGGGAATAATa

Function

GO: NA

KEGG:

id description
K20353 SEC16; COPII coat assembly protein SEC16

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU181455 lncRNA upstream 12742 9700167 ~ 9750777 (+) True AMCG00004921
TU181382 lncRNA upstream 206044 9554100 ~ 9557475 (+) True G144237
TU181368 lncRNA upstream 262541 9494496 ~ 9500978 (+) True G144227
TU181359 lncRNA upstream 296906 9464141 ~ 9466613 (+) True G144218
TU181351 lncRNA upstream 314986 9447589 ~ 9448533 (+) True G144210
TU181492 lncRNA downstream 63705 9843429 ~ 9847756 (+) True G144315
TU181493 lncRNA downstream 63705 9843429 ~ 9847756 (+) False G144315
TU181495 lncRNA downstream 63705 9843429 ~ 9847756 (+) False G144315
TU181537 lncRNA downstream 168686 9948410 ~ 10015424 (+) False AMCG00004935
TU181539 lncRNA downstream 222674 10002398 ~ 10015424 (+) True AMCG00004935
AMCG00004921 mRNA upstream 15964 9746540 ~ 9747555 (+) False AMCG00004921
AMCG00004929 mRNA upstream 74728 9685517 ~ 9688791 (+) True AMCG00004929
AMCG00004924 mRNA upstream 79396 9663323 ~ 9684123 (+) True AMCG00004924
AMCG00004923 mRNA upstream 105516 9653584 ~ 9658003 (+) True AMCG00004923
AMCG00004928 mRNA upstream 112456 9647466 ~ 9651063 (+) True AMCG00004928
AMCG00004932 mRNA downstream 68860 9848584 ~ 9888182 (+) True AMCG00004932
AMCG00004936 mRNA downstream 158697 9938421 ~ 9941239 (+) True AMCG00004936
AMCG00004935 mRNA downstream 218206 9997930 ~ 10011023 (+) False AMCG00004935
AMCG00004934 mRNA downstream 270334 10050058 ~ 10116505 (+) True AMCG00004934
AMCG00004945 mRNA downstream 825923 10605647 ~ 10607897 (+) True AMCG00004945
TU180912 other upstream 2032519 7729389 ~ 7731000 (+) False AMCG00004870
TU180621 other upstream 4339398 5423703 ~ 5424121 (+) True G143626
TU180426 other upstream 5391430 4371709 ~ 4372089 (+) True G143471
TU180351 other upstream 5653864 4109022 ~ 4109655 (+) True G143404
TU180311 other upstream 5813682 3949426 ~ 3949837 (+) True G143366
TU181952 other downstream 1882957 11662681 ~ 11663368 (+) True G144677
TU182286 other downstream 3000856 12780580 ~ 12781170 (+) True G144940
TU183002 other downstream 5604519 15384243 ~ 15384612 (+) False AMCG00005105
TU183561 other downstream 7985533 17765257 ~ 17771525 (+) True G145932
TU184056 other downstream 9799849 19579573 ~ 19579807 (+) True G146305

Expression Profile