RNA id: AMCG00004938



Basic Information


Item Value
RNA id AMCG00004938
length 294
RNA type mRNA
GC content 0.51
exon number 2
gene id AMCG00004938
representative True

Chromosome Information


Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 10838986 ~ 10841454 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CGTGGCACGGAGGGCTTCTGGAAATCTGTGGCTCAGCACGTCCCGAAAGAGCCCAGCGAGATGCGCATCCTCAATCCCTATTTCATCCAGGAAGCTGCTTTCCAGTTCATTGGGTTGCCCCTAAACAATGGCCTCATGGGGAAAGGGAATATCCCAACTCTTGGAACCGTTGCAATAACAATGGCTCTTCATAATTGTGATGAGGTAGCTGTGGCCGGATTTGGGTATGACATGAATGCTCCCCACGCCCCACTGCACTACTACGAGACTGTGAAGATGTCTGCTATTAAAGAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU181537 lncRNA upstream 823562 9948410 ~ 10015424 (+) False AMCG00004935
TU181539 lncRNA upstream 823562 10002398 ~ 10015424 (+) True AMCG00004935
TU181492 lncRNA upstream 991230 9843429 ~ 9847756 (+) True G144315
TU181740 lncRNA downstream 154928 10996382 ~ 10997606 (+) True G144512
TU181765 lncRNA downstream 294303 11135757 ~ 11139343 (+) True G144534
TU181789 lncRNA downstream 356859 11198313 ~ 11199835 (+) True G144549
TU181831 lncRNA downstream 403148 11244602 ~ 11247808 (+) True G144581
TU181861 lncRNA downstream 487823 11329277 ~ 11331419 (+) False G144603
AMCG00004939 mRNA upstream 16114 10818400 ~ 10822872 (+) True AMCG00004939
AMCG00004941 mRNA upstream 40185 10776248 ~ 10798801 (+) True AMCG00004941
AMCG00004946 mRNA upstream 98733 10727154 ~ 10740253 (+) True AMCG00004946
AMCG00004944 mRNA upstream 122786 10676345 ~ 10716200 (+) True AMCG00004944
AMCG00004943 mRNA upstream 175034 10653590 ~ 10663952 (+) True AMCG00004943
AMCG00004940 mRNA downstream 36473 10877927 ~ 10880307 (+) True AMCG00004940
AMCG00004951 mRNA downstream 90439 10931893 ~ 10940644 (+) True AMCG00004951
AMCG00004952 mRNA downstream 101795 10943249 ~ 10950084 (+) True AMCG00004952
AMCG00004953 mRNA downstream 114782 10956236 ~ 10958783 (+) True AMCG00004953
AMCG00004950 mRNA downstream 158483 10999937 ~ 11009196 (+) True AMCG00004950
TU180912 other upstream 3107986 7729389 ~ 7731000 (+) False AMCG00004870
TU180621 other upstream 5414865 5423703 ~ 5424121 (+) True G143626
TU180426 other upstream 6466897 4371709 ~ 4372089 (+) True G143471
TU180351 other upstream 6729331 4109022 ~ 4109655 (+) True G143404
TU180311 other upstream 6889149 3949426 ~ 3949837 (+) True G143366
TU181952 other downstream 821227 11662681 ~ 11663368 (+) True G144677
TU182286 other downstream 1939126 12780580 ~ 12781170 (+) True G144940
TU183002 other downstream 4542789 15384243 ~ 15384612 (+) False AMCG00005105
TU183561 other downstream 6923803 17765257 ~ 17771525 (+) True G145932
TU184056 other downstream 8738119 19579573 ~ 19579807 (+) True G146305

Expression Profile