RNA id: AMCG00004940



Basic Information


Item Value
RNA id AMCG00004940
length 558
RNA type mRNA
GC content 0.62
exon number 3
gene id AMCG00004940
representative True

Chromosome Information


Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 10877927 ~ 10880307 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGCTCTGGTTCCTGGGATCTCTGGTGGCCCTCGCGGAGGGGGGTGTTCCCGGGGAGGGCCTGGGATCTGAGCCCAACCCTGCTGTCGAGGGAGGGCCCGGGAGCGTGGGCTGGACCCCCCCAGACAGCCTGGAGCTGGACGAGACGAGTGAAGACATTGATGTCCCCTCCTCCTGGGCCGGCCTCTTCGTCAACCCCCCGCTCCTAGAAGACGCGGAGGACCACCAGGGCCGATGGGAACGCTCTCCCTTAGACTCTGTCCAGGCCAAGGGCAAGGAGAGAAAGAGGCCCAAGGATGTCAAACGGGACTGCAGACTGAGGACTAAGACCCTGCGTGTGCGAGACCTGGGGCTGGGCTACGAGTCCGACGAGATTGTCCGTTTCAAGTACTGTGCTGGCTCCTGCCAGAGCAAACGCACTGAGTACGACCTCACGCTCAACGCGCTCATGAAGAACGGCCTCATCAAAAGCAAGGAGAAGAAACTCGCCTGGCATCACTGTTTCAGAGGCTCAAGCATCGCCCAGCAGTGGGTGAGGCTGACGGAGATTGCACCATGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU181537 lncRNA upstream 862503 9948410 ~ 10015424 (+) False AMCG00004935
TU181539 lncRNA upstream 862503 10002398 ~ 10015424 (+) True AMCG00004935
TU181492 lncRNA upstream 1030171 9843429 ~ 9847756 (+) True G144315
TU181740 lncRNA downstream 116075 10996382 ~ 10997606 (+) True G144512
TU181765 lncRNA downstream 255450 11135757 ~ 11139343 (+) True G144534
TU181789 lncRNA downstream 318006 11198313 ~ 11199835 (+) True G144549
TU181831 lncRNA downstream 364295 11244602 ~ 11247808 (+) True G144581
TU181861 lncRNA downstream 448970 11329277 ~ 11331419 (+) False G144603
AMCG00004938 mRNA upstream 36473 10838986 ~ 10841454 (+) True AMCG00004938
AMCG00004939 mRNA upstream 55055 10818400 ~ 10822872 (+) True AMCG00004939
AMCG00004941 mRNA upstream 79126 10776248 ~ 10798801 (+) True AMCG00004941
AMCG00004946 mRNA upstream 137674 10727154 ~ 10740253 (+) True AMCG00004946
AMCG00004944 mRNA upstream 161727 10676345 ~ 10716200 (+) True AMCG00004944
AMCG00004951 mRNA downstream 51586 10931893 ~ 10940644 (+) True AMCG00004951
AMCG00004952 mRNA downstream 62942 10943249 ~ 10950084 (+) True AMCG00004952
AMCG00004953 mRNA downstream 75929 10956236 ~ 10958783 (+) True AMCG00004953
AMCG00004950 mRNA downstream 119630 10999937 ~ 11009196 (+) True AMCG00004950
AMCG00004957 mRNA downstream 302950 11183257 ~ 11195427 (+) True AMCG00004957
TU180912 other upstream 3146927 7729389 ~ 7731000 (+) False AMCG00004870
TU180621 other upstream 5453806 5423703 ~ 5424121 (+) True G143626
TU180426 other upstream 6505838 4371709 ~ 4372089 (+) True G143471
TU180351 other upstream 6768272 4109022 ~ 4109655 (+) True G143404
TU180311 other upstream 6928090 3949426 ~ 3949837 (+) True G143366
TU181952 other downstream 782374 11662681 ~ 11663368 (+) True G144677
TU182286 other downstream 1900273 12780580 ~ 12781170 (+) True G144940
TU183002 other downstream 4503936 15384243 ~ 15384612 (+) False AMCG00005105
TU183561 other downstream 6884950 17765257 ~ 17771525 (+) True G145932
TU184056 other downstream 8699266 19579573 ~ 19579807 (+) True G146305

Expression Profile