RNA id: AMCG00004941



Basic Information


Item Value
RNA id AMCG00004941
length 465
RNA type mRNA
GC content 0.55
exon number 7
gene id AMCG00004941
representative True

Chromosome Information


Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 10776248 ~ 10798801 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGAAGCCTACACGAAACCTGCTACTGGTGTTGTGTCCCATGCTGGTCCTGGGCTTCTTGTACTACTCTTCAGGGAAGTTGCATCTGCGTGTGTGGGGACAGAAGTCACACAACCTCCAGAACCCCTCCCTGCTTGCTCTGCTCGAGAGGCGCTTAGATCTGGGAGAGTCCGATGTGGATTCCTCACTCTCCGTGGGACACCAGAGGGCCTCAGTGTATGACAAGCAGGGGTTCCTGCTGAAGCTGGATGGTAAACTCCCTCTAGACTTATCGTATAAGTATGGCAATCTCAGTGAAGGAACCTGCAAGCCAGGGTACGCAGCGGCCAAGATGACAGCCATCTATCCAAAGACTCTGCGGAGCTGGAGCTCAGAGGTAGACAAACAGCCAGAGCCAGCCAAGCCCTGCCAGGAGGTCCAGGTCAAAGCACAGGGAGCTCAGCCAGACAGGGCCCCCTTCAGATGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU181537 lncRNA upstream 760824 9948410 ~ 10015424 (+) False AMCG00004935
TU181539 lncRNA upstream 760824 10002398 ~ 10015424 (+) True AMCG00004935
TU181492 lncRNA upstream 928492 9843429 ~ 9847756 (+) True G144315
TU181740 lncRNA downstream 197581 10996382 ~ 10997606 (+) True G144512
TU181765 lncRNA downstream 336956 11135757 ~ 11139343 (+) True G144534
TU181789 lncRNA downstream 399512 11198313 ~ 11199835 (+) True G144549
TU181831 lncRNA downstream 445801 11244602 ~ 11247808 (+) True G144581
TU181861 lncRNA downstream 530476 11329277 ~ 11331419 (+) False G144603
AMCG00004946 mRNA upstream 35995 10727154 ~ 10740253 (+) True AMCG00004946
AMCG00004944 mRNA upstream 60048 10676345 ~ 10716200 (+) True AMCG00004944
AMCG00004943 mRNA upstream 112296 10653590 ~ 10663952 (+) True AMCG00004943
AMCG00004945 mRNA upstream 168351 10605647 ~ 10607897 (+) True AMCG00004945
AMCG00004934 mRNA upstream 659743 10050058 ~ 10116505 (+) True AMCG00004934
AMCG00004939 mRNA downstream 19599 10818400 ~ 10822872 (+) True AMCG00004939
AMCG00004938 mRNA downstream 40185 10838986 ~ 10841454 (+) True AMCG00004938
AMCG00004940 mRNA downstream 79126 10877927 ~ 10880307 (+) True AMCG00004940
AMCG00004951 mRNA downstream 133092 10931893 ~ 10940644 (+) True AMCG00004951
AMCG00004952 mRNA downstream 144448 10943249 ~ 10950084 (+) True AMCG00004952
TU180912 other upstream 3045248 7729389 ~ 7731000 (+) False AMCG00004870
TU180621 other upstream 5352127 5423703 ~ 5424121 (+) True G143626
TU180426 other upstream 6404159 4371709 ~ 4372089 (+) True G143471
TU180351 other upstream 6666593 4109022 ~ 4109655 (+) True G143404
TU180311 other upstream 6826411 3949426 ~ 3949837 (+) True G143366
TU181952 other downstream 863880 11662681 ~ 11663368 (+) True G144677
TU182286 other downstream 1981779 12780580 ~ 12781170 (+) True G144940
TU183002 other downstream 4585442 15384243 ~ 15384612 (+) False AMCG00005105
TU183561 other downstream 6966456 17765257 ~ 17771525 (+) True G145932
TU184056 other downstream 8780772 19579573 ~ 19579807 (+) True G146305

Expression Profile