RNA id: AMCG00004950


Basic Information

Item Value
RNA id AMCG00004950
length 2324
RNA type mRNA
GC content 0.53
exon number 16
gene id AMCG00004950
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 10999937 ~ 11009196 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgagttttttttcaatCCAAAGCAAAAGCGCCCTTCATCCTACTAGATCAGAAGCGACCGGATGTGGTTGATGATGAGCAGAAATCCCAACAGATGTTTAATGAAGTCCGTGTTTGACGAAACTCCATGTCGGGTTTTGCGGGTTTCTCTCCCATCGGCACCCTTTATGAGGAGCGGCGCCGCTGGAAGCCGGGCAGTGCGGCCGCTCAGTTGCCGCCATGCGTACCGCGTCTCGCTGCCCCTCTGTCGGCTGGTCTGAGCCCGGCTGCGGGGCTGTGTTAGCCGGGGTGGCCTGCGGCGCCGGGGCTGTCTTTATACTGTATAAATGGAGGAGTAAATACAGAGCACGGAGGAAGGCGGAGAGGGCGAGGCTCAAAAGGGAGGCATCGTTTCGGGAGGTGGACACCGCCGTGCAGCAGTTCAAGGAAAAGCACCCTGGGACAGATTACGCCTCCATCCTGTCTTTGTCCCTGGAGGAGCTGAGCAGCCGGCTGAGAGAGAGATCACTGAGTCCCGAGACAGTGCTGCACACTTACATGGGCAAGGCCCTCGAGCTGTCGAGGACACTGAACTGTACCACTGGATTCCTACTGGAGAGCCGTGACCATCTCCCACAGGTGGAGCAATGCACAGAGGGCCTCCTCTATGGGGTTCCTGTCAGCATCAAGGATAATGTTGCGTACAAGGGCCATGACTCCTCTTGTGGGGTGCTGTCAAAACTGGAGCAGCCAGAACCTGAGGACAGTGTGGTGGTCCAAGTGCTGAAGAAACAGGGGGCTATTCCCTTTGTGAAAACCAATATTCCTCAGGGCATGATGAGCTATGATTGCAGTAACCCCATCTACGGCCGGTCGCTCAACCCGTGTAACCTGAACAAGACACCGGGGGGGTCTTCAGGAGGCGAGGGGGCCCTGATCGGTGGAGGGGGCTCAGTCCTGGGGCTCGGCACTGATATCGGGGGCAGTATTCGGATCCCAGCCTCTTTCTGTGGCATCTGCGGCCTCAAACCAACAGCTGGCCGATTCAGCACACGTGGTATTCAGTCCTGCGTCTCTGGTCAGAAATCAGTGCTCTCCTCATTGGGCCCGATGGCCAGGGATGTGGAAGGCTTGGTCCTGTGCATGAAGGCTCTTCTCTGTGACCACATGTTCAGATTGGACCCCACGGTGCCGCCCATCCCCTTCAATGAGGAGATGTACACGAGTTCCAAGCCCCTCAGGATTGGCTACTATGAGAGCGATGGGTTTCACATGCCTTCCCCAAGCATGAGCAGAGCCGTCCGGGAAACCAAGGAGCGGCTGCAGAAAGCAGGGCACACCCTCATTCCCTTCACCCCACCTCACCTTGACTATGCCATACCCGAATTGGTCCTCAGAGGGATCCTGGCTGATGGGGCGGCCACACTACTCAAAAGCGTGACTGAAGGCAGCATCGATCCTACAGTCAATGTCCAGATCATCCCCTACAAGCTGCCCCGTTTCCTCAAGAAGATCATCGCTGTCCTTCTGAAGCCCCTGTATCCTCGTGTATCCTCATCATTCAGCGCACTTTGTGGAGTCAGTTCTATACCGGATCTTTGGAAGCAGCATGTGGCAGTGCAGGATTATTGCCACAATTTCATCTCTGAGTGGAGGAAGAGGGACCTGGACGTGCTGCTGTGTCCAATGTTGGGTCCTGCTTACAACCCCAACTACTGTGGAAAACTGATGTGTACCATCAGCTGTGTCGTGCTGTTCAACCTGCTGAACTTTCCGGCAGGGGTGGTCCCTGTAACCACAGTGACCGAGAAGGATGAGGAGGAGCTCCAGGATTACAGGGGCATCCACGGTGACCCTTGGGACAAGCTCTTCATACCGGCTCTGAGTGGCGGCCAAGGCCTGCCCATCGCTGTGCAGTGCGTGGCCCTCCCCTGGCAGGATGAGCTGTGCCTGCGCTTCATGAAGGAGGTGCAGACGCTCACTGCGTACAACAGCAAAGAGTGACTGACTGCGCACCAATTGCATTTGTAACTCCTTTACATTGctacttattttttaacaatcGAATGTTTCTAGATCAGTTCATGCTTGTACGGGAGATGtgcacagcttttgtttttaaatgtctattaAAATACTCACCACACAACTAGAAAGGTGACGGTGACAATGGTGGAGTTCACGCGTGTGTGTTTTGCACCCAGACATACAGGCAGTCATCACATCATGCCAAGACTGAGCACAATATCtggtttaatgttaattttcttccacttttctttgtctgtctgtaatGTAAAGCAATATGTgcaaatggtaaaaaaaaataaacaaatttaaatgca

Function

GO: NA

KEGG:

id description
K15528 FAAH; fatty acid amide hydrolase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU181740 lncRNA upstream 2331 10996382 ~ 10997606 (+) True G144512
TU181537 lncRNA upstream 984513 9948410 ~ 10015424 (+) False AMCG00004935
TU181539 lncRNA upstream 984513 10002398 ~ 10015424 (+) True AMCG00004935
TU181492 lncRNA upstream 1152181 9843429 ~ 9847756 (+) True G144315
TU181765 lncRNA downstream 126561 11135757 ~ 11139343 (+) True G144534
TU181789 lncRNA downstream 189117 11198313 ~ 11199835 (+) True G144549
TU181831 lncRNA downstream 235406 11244602 ~ 11247808 (+) True G144581
TU181861 lncRNA downstream 320081 11329277 ~ 11331419 (+) False G144603
TU181862 lncRNA downstream 320081 11329277 ~ 11331419 (+) True G144603
AMCG00004953 mRNA upstream 41154 10956236 ~ 10958783 (+) True AMCG00004953
AMCG00004952 mRNA upstream 49853 10943249 ~ 10950084 (+) True AMCG00004952
AMCG00004951 mRNA upstream 59293 10931893 ~ 10940644 (+) True AMCG00004951
AMCG00004940 mRNA upstream 119630 10877927 ~ 10880307 (+) True AMCG00004940
AMCG00004938 mRNA upstream 158483 10838986 ~ 10841454 (+) True AMCG00004938
AMCG00004957 mRNA downstream 174061 11183257 ~ 11195427 (+) True AMCG00004957
AMCG00004958 mRNA downstream 192765 11201961 ~ 11214509 (+) True AMCG00004958
AMCG00004959 mRNA downstream 207996 11217192 ~ 11221581 (+) True AMCG00004959
AMCG00004967 mRNA downstream 238944 11248140 ~ 11252830 (+) True AMCG00004967
AMCG00004970 mRNA downstream 300764 11309960 ~ 11314366 (+) True AMCG00004970
TU180912 other upstream 3268937 7729389 ~ 7731000 (+) False AMCG00004870
TU180621 other upstream 5575816 5423703 ~ 5424121 (+) True G143626
TU180426 other upstream 6627848 4371709 ~ 4372089 (+) True G143471
TU180351 other upstream 6890282 4109022 ~ 4109655 (+) True G143404
TU180311 other upstream 7050100 3949426 ~ 3949837 (+) True G143366
TU181952 other downstream 653485 11662681 ~ 11663368 (+) True G144677
TU182286 other downstream 1771384 12780580 ~ 12781170 (+) True G144940
TU183002 other downstream 4375047 15384243 ~ 15384612 (+) False AMCG00005105
TU183561 other downstream 6756061 17765257 ~ 17771525 (+) True G145932
TU184056 other downstream 8570377 19579573 ~ 19579807 (+) True G146305

Expression Profile