RNA id: AMCG00004951


Basic Information

Item Value
RNA id AMCG00004951
length 2436
RNA type mRNA
GC content 0.52
exon number 13
gene id AMCG00004951
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 10931893 ~ 10940644 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATTTGAAacaacattgtgttttaaaacgCAGCTGGTCCTGCACTTCTAATTTAATTCGCTAATATCAGTACTGTATTGGGCAGGtcccattttccatttttgagATGCTGCCTGGAGTGGATAACGCAGAGCTGCAGTGCTGTGCCACAGTGGAGCGGATCAGCGCCACTGGCCAGACCACCAAGCGCCAGGTCATCCGGAAGGCGGTGGTGACGCTGGGGCGCAACGAGTTCCAGGAGATGGTCCTTCGTGTTGAGGACGGCAAAGTTCCTCAAAGCTTCATACTGCGGGAGATCCAGCTCTTCACTCGTTTCGCTCGGGATGGGAAGAGCACCATCAGACTAGTCCCTGACCACATTCAAGTCCTGATCTCCGACTGCCCCCCGGATAGACTGCGTGTTTTCCTGAAGACGTTGAGCATCAAGCACCAGGCCTGGCAACAAACCGGCAAGCCCCTGGGGAATCGGGCCAAGCTGCTGTCCGGGCTGCCCCACAGCTTCGAGACCATCAGTCCTCTGCAGCAGAAGGACGTACAGAAAGCTAATGCCCTGCGAGAGAAGGTCAACCTGCAGCCCCCCAGTAAAGGCCTGCAGGGAAGAGATGGCAATAAAGCTGGTGGCCTGCAGGTGAAAAGACAGAGACCAGACTCCACAGAAAGCAGCCCCGTAAAAGCTTTGCACCCTGCTAAGAAGCCTGTCCTGACTCTGCCAGTGGCGAGGAAGCTGTCCAAAGAGCAGACCATGGTTCTGAGCGCCGTCCTCAGTGGGAAAAATGTGTTCTTCACAGGCAGTGCTGGTACGGGTAAATCTTTTTTACTGAAGAGGATTGTGGGATCCTTGCCCCCTAAAAGCACCTATGCCACAGCGAGCACTGGCGTGGCTGCCTGCCATATCGGGGGAACCACTCTCCATGCCTTCGCAGgtaTTGGGTCGGGCTCAGCCCCTCTGGAGCAGTGTGTGGACCTGGCTCAGCGCCCGGGGGTATTGCAGCATTGGACCAGCTGTCGCCACCTCATCATCGATGAGATTTCCATGGTGGAGGGGGAGTACTTTGACAAGCTGGAGGCCATAGCCAGGTCCATCAAGAGGTCTACTGAACCCTTTGGAGGGATCCAACTCATTGTGTGTGGAGACTTCCTGCAGCTTCCTCCAGTCAGCAAGGGCAAAGCAAAGTTCTGCTTCCAGGCAAAGAGCTGGCGGAAGTGTATTCATGTGAATATGGAGCTGACGGATGTGAGGAGACAGACGGACAAGTCCTTCATCTCCCTGCTGCAGGCGGTGAGGGTGGGCAGGGTCACAGAAGATGTCACAGCCCGGCTCATGGAAACTGCGTATCACACAATTGAGAGAGATGGTATCCTGGCAACCAGGCTGTGCACACACAAAGATGATGTGGAGCTGACCAATGAGAGGAAACTTGAGCAGTTACTGGGGGCAGTTCGGGTGTTTGAGGCCGTGGACAGTGACCCCCAGCTGGTGAAGCACATTGATGCCCAGAGCCCTGTGGGTCGGGTACTGCAGCTGAAAGTGGGAGCTCAGGTGATGTTGACGAAGAACCTGGATGTCCAACGCGGCCTCGTGAACGGAGCGCGGGGTGTGGTCGTGGGATTCGAGCCTGGAAACAAAGgCCTGCCACGGGTGCGTTTCCTGTGTGGGCTGACGGAGGCCATGAAGCCGGAGCGCTGGATGTTCAAGGCGGGGGGTGGCCTGTATCTCAGCCGCCAGCAGCTCCCTCTGAAACTGGCTTGGGCCATCTCCATCCACAAGAGCCAGGGGATGACTCTGGACTGTGTGGAGATCTCTCTGTCGCGGGTGTTCGAGAGCGGGCAGGCATACGTGGCCCTGTCGCGTGCCCGCAGTCTGGAGGGGCTCCGGGTCATGGACTTCGACCCCCGGGTGGTGAGGGCCGACCCAGAAGTGCTGCAGTTTTATCGCCGGCTGAGGAAAGAGCGCCTCCTCATGCAGGCCTCAATGGATGAGTACATAGAGAGAGCGAACCAGGAAAATGAATATCGATGACCGAATCTGCTCCAAGAGCAAGGAGCAGTATCTCTGCACTGTATGCATTTACATGTACAGAAactgatcctttttttttttaatccagtcATGTTTACATCTGAAATGCACTTTTCCATCAAATGTTATACCAAAGTATGCATTTGAATCACTACATCATGgtaatgaatgtatttacatCGGTAATGAGACTGAAGAGATCATATTCAGTGCAATCCATCTCATTCCCCATTGATGTTTTGAATACGAagactatttaaatgttttaatgtatgtatgatttTACATTAGGTTTTTCCACATTAGAAATGTGTAAAGGCAGTATATaggtgtatatatttgtacttttttaaaaaggcatcTTCTGACTGAactgttttttactttttttttgtaaataaagacCGTTTTCAAAAAC

Function

GO:

id name namespace
GO:0000002 mitochondrial genome maintenance biological_process
GO:0006310 DNA recombination biological_process
GO:0006200 obsolete ATP catabolic process biological_process
GO:0000723 telomere maintenance biological_process
GO:0032508 DNA duplex unwinding biological_process
GO:0006281 DNA repair biological_process
GO:0005634 nucleus cellular_component
GO:0005739 mitochondrion cellular_component
GO:0005524 ATP binding molecular_function
GO:0003677 DNA binding molecular_function

KEGG:

id description
K15255 PIF1; ATP-dependent DNA helicase PIF1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU181537 lncRNA upstream 916469 9948410 ~ 10015424 (+) False AMCG00004935
TU181539 lncRNA upstream 916469 10002398 ~ 10015424 (+) True AMCG00004935
TU181492 lncRNA upstream 1084137 9843429 ~ 9847756 (+) True G144315
TU181740 lncRNA downstream 55738 10996382 ~ 10997606 (+) True G144512
TU181765 lncRNA downstream 195113 11135757 ~ 11139343 (+) True G144534
TU181789 lncRNA downstream 257669 11198313 ~ 11199835 (+) True G144549
TU181831 lncRNA downstream 303958 11244602 ~ 11247808 (+) True G144581
TU181861 lncRNA downstream 388633 11329277 ~ 11331419 (+) False G144603
AMCG00004940 mRNA upstream 51586 10877927 ~ 10880307 (+) True AMCG00004940
AMCG00004938 mRNA upstream 90439 10838986 ~ 10841454 (+) True AMCG00004938
AMCG00004939 mRNA upstream 109021 10818400 ~ 10822872 (+) True AMCG00004939
AMCG00004941 mRNA upstream 133092 10776248 ~ 10798801 (+) True AMCG00004941
AMCG00004946 mRNA upstream 191640 10727154 ~ 10740253 (+) True AMCG00004946
AMCG00004952 mRNA downstream 2605 10943249 ~ 10950084 (+) True AMCG00004952
AMCG00004953 mRNA downstream 15592 10956236 ~ 10958783 (+) True AMCG00004953
AMCG00004950 mRNA downstream 59293 10999937 ~ 11009196 (+) True AMCG00004950
AMCG00004957 mRNA downstream 242613 11183257 ~ 11195427 (+) True AMCG00004957
AMCG00004958 mRNA downstream 261317 11201961 ~ 11214509 (+) True AMCG00004958
TU180912 other upstream 3200893 7729389 ~ 7731000 (+) False AMCG00004870
TU180621 other upstream 5507772 5423703 ~ 5424121 (+) True G143626
TU180426 other upstream 6559804 4371709 ~ 4372089 (+) True G143471
TU180351 other upstream 6822238 4109022 ~ 4109655 (+) True G143404
TU180311 other upstream 6982056 3949426 ~ 3949837 (+) True G143366
TU181952 other downstream 722037 11662681 ~ 11663368 (+) True G144677
TU182286 other downstream 1839936 12780580 ~ 12781170 (+) True G144940
TU183002 other downstream 4443599 15384243 ~ 15384612 (+) False AMCG00005105
TU183561 other downstream 6824613 17765257 ~ 17771525 (+) True G145932
TU184056 other downstream 8638929 19579573 ~ 19579807 (+) True G146305

Expression Profile