RNA id: AMCG00004971


Basic Information

Item Value
RNA id AMCG00004971
length 5220
RNA type mRNA
GC content 0.42
exon number 8
gene id AMCG00004971
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 11282626 ~ 11309243 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAAACAATCTAATtgttataaaatgaaaaggcaatGTTGTATTTCACAGGAAGGTTGTGCTCTGGTCAATCTGCAGTCAGAATCTGGACCAAAAGGAAGTGACTGCCATTGCTTAATAGCCAATCTGATTTCCAATTGGCTTCTCATGGATCAGCCCTGCTCCCCTAggccaaacacattttttacttCAAGTAGCCCACAATGCCCATTGGTACTGCTGGACTAATGATCCCAACCCTTGGGGGACTTTACTCTGATTAGCTGAAATCCCAAATTGCCTTTGTTTATCAAAATCTCTTCTGGTGAGTGCATGTATCATGAATGAGTTAAATAAgttcatgttaaatatatatgccTTATTATGTTACTATGGAAGGGTCACCCGTTATGAACATGATCAGGGCAATGGCCTTTACAACGGTGGAAAAAACGACATATGAGTGGAAGATGGAATGGAGATTTTGAAATAATAGCCTATTTTATGATATGATACATACTTGAATTCTATTTCATTCGATTCAATTCAAACGTTTATGAATATTCCCAAAACACTTGCAAATCTCCAAATCAAACCATAAAACAGTCACCCAGTGGTGCTATAGAATGGAAACACTGGGACTTTGTATGTGAAGAAGAGGTCAGCTGTATTTATATGGGAAATGACGTGTTTCAGTACCAACTTTCTAGAAAGAGCTGCTGGATTCCAGTGGCACCAGCACAGGGCGGGCGATGGCTATTTAAAGGTGGCAGCAGAGGGGAAACACAAGGACTGAAGTGTGGAGCCACGCTTTACTCTCCCCACATGAAAGAGCTGTCATCCTTATACCACCCATAGGTGTTATATAAAAGAGCAGTCATCCCTGTCTATAAGAGCCGCGTTTCCCTGTCGCCGGGTGCATTACTGTGGAGGCGAAACAGATCTGCCTGCATACGGGCTCCCGGTAGCGCACGAAAATGGGGAAGGATTACTACAAAATACTGGGAATACAGAAAGGAGCAGCGGACGAAGACATCAAGAAAGCATACAGAAAGCAGGCTCTGAAATGGCACCCAGATAAAAACAAGAGTGCCAATGCAGAAGATAAATTTAAGGAAATCGCAGAGGCATACGAAGTTCTCAGCGACcccaaaaagagagagatttacGACCAATTCGGAGAAGAAGGTCTTAAAGGAGGGGCAGGAGGTTGTGACGGGCAGGGAGGGAATTACACCTACACATTCCATGGAGACCCCCATGCTACATTCGccgccttttttggaggctccaaTCCCTTCGAAATGTTCTTTGGGAGGAAGGCGGCCAACGGGCGGGATGAGGAGGATATGGAGGTGGACTCAGATCCCTTCGGTTCCTTCAGCAGCTTCAACCTGAACGGCTTCCCGCGGGACAGACACATGGGGTTGGGGCAGGTCAGACGCAAGCAGGACCCCGCCATCCATCATGAGCTGAGGGTGTCCCTGGAGGAGATCTTCAATGGCTGCACCAAGAGGATGAAGATCTCCAGGAAGAGGCTGAACCCTGATGGCAGGTAAAGGAGTTTCGGTATCAAGCGATAGCTCCTCAACACCCGGGCTTCCTCCTCCCACTGCGCCTGCGCTCGCACAATGTGGCAGCAGCGTCGCTATTGTTCAGCCCCACTCCAGCCTATGCGGGACCACTTTTGAGCAGAGGGCGCAACCGCGGTGCAACTTCTCCATTGGCTGCCCTACCTGTTGCACACCGAGGACGGGCGAGAGTGCCAGCCGCTGCTGAAGAACAAAGTCTGGGCAGGAAAGGAGACGCACTTTCACAGGTGGACCGGCGGGTTAGCTGGCAAGGACGGGCAAATCCCTGTTGGCGTGCGTCAAACGAGAGCGCACTTTGCAtttgctgggggggggggaagagaggagagagatgccCCTGGGGttaaggaagaagaaaaacaagtcgAGGGAGAGCTCGCACTTGGTGGAGAATGAGGAGACGGCAGGGTTGGCGGGGGGCAGCGAGAATAAGACGGCGGTCAATGGAGCCGGGCTGCCCCCTCCGCCTGCCAACCTGCGGCCCAAGCTGGTCTTCCACACGCAGCTCGCCCATGGCAGCCCCACCGGCAGGATCGAGGGCTTCACCAACGTCAAGGAGCTCTATGGGAAGATAGCCAGCGCCTTCAACCTCAGTGCAGCAGAGATCCTGTTCTGTACACTAAACACTCACAGGATTGACATGGACAAGCTCTTGGGAGGACAGATAGGCCTGGAAGACTTCATATTTGCCCACATAAAAGGAATAAAGAAAGAGGTGGAGGTCTTCAAAGCAGAAGAAGCCTTGGGGCTCACCATCACAGACAATGGGGCCGGATACGCTTTCATAAAGCGCATAAAGGAAGGCAGTGTGGCTGACGGCGTTAAAGTTATCTGTGTTGGGGACCACATAGAGTGTATCAATGGACAAAACATCGTGGGCACCAGACACTACGAGGTGGCCAGAATGCTGAAGGAACTGCCAAAAGGAAAGACCTTCACCCTCAAGCTAGTGGAACCAATGAAAGCATTTGAAATGATTGAACCAAGATCCAAAGGCGCAAAGCCTGGcgcagaaaacaaaataggcACCGGTCGAGGCACATTAAGACTGCGATCAAAAGGGCCAGCGACCGTGGAGGAAGTTTGGAAAATTATTCTTCAGCCAACAGAGTTTGAAGAAAAAGCGACAAAGAAAGTGGACGACCTTCTGGAAAGCTACATGGGAATCCGAGACACTGAATTAGCTGCCACCATGGTAGAGGTGGGAAAGGACAGAAAGAACCCAGATGAGTTTGCCATGGCGCTGGACGAGGCCCTGGGCGACTTCGCCTTCCCAGATGAGTTTGTGTTCGACGTCTGGGGAGCAATAGGAGATGCCAAGCAAGGCCGGCTTCAATAAGTGTTGTACATATGtcaaagagggaaaaaaaggaaaaaaacaatagcagtGTTTTgggattatttgttttttttaagatttttttttatagattatAGTACTGCAAACACAACTGTGatctaaagaaaaatatatttttaacctacattttagtttgtgtgttttttttttattattattaattcaagtTTACTTTTGTCACCACAAGTACTGCTGCTTGCTCCTtaacttaaattattttctttctcattcaaatatattttctagaTTAACGGTACACTGAGGAAACTTAACGGCAGCAATATGGAATTTCACTCAAACGCATACATGCATTTTCCACAAGCTTTACTCTCAGACTCTCCATATATAGTTTAAATTGCTCTCCCTTTTCATGTTCTGGGTCTGAACATCGCAGACCCTCTAGGTTGCATCTGGGGGAACTGTAATCGTTCCCTTCAGGACTCTGTAGATTGCAATTGAACTCACTTCATGATGAATGGCCATCTAGTGAGTATTTGTAAATTTCTACTGACCCCTGAAGCCTTTATCCTCTTCAAAGCTAAACCTAATCGATCATCAAAGCAGAATTTATTTGAACAGACTGTGGGTTTTATGAAGAAACCATGCTTTAATTAATCTCTGTCCATTGGTTTTATTGGTTCCTCTTGATTTTTGTACCATTCCCCCCCCCAGTCATTCTCTATCCTGCATGCCACACAATCTGCAGCCTGCGTTTCCCCCCCCGCGTGGAAATTTAACCAGGGAGCGCTACACAACCAAACAATATCGTCTGCTTCAATGAGTGACATGCCCAACGGCCACTAAGATCTAATTGAATTGCCgctttaatttcattaatttaggGAACAGGGGGAAAAAGTGATTATAATATGAATGACCATTCCTTTCATTGAGTTTTAGACGATTGTgctcctaaaaaaaaaaaaaagcaacactcTACATACTCTACAggtgtttagattttttgtatctcatttaatttatttgtttaatacaatatttgaatattatatAACATGAATCTATTTTTTACAATGTGAAAATGAGAGAAATTAGTTAATAAATTTGAATTATCCTTTATATGCCTCTGATATAAGTGTCTTTCTTTAGTAATTGAATCTTTTCATTCTATTTTGGAGATTTTGGAGGGTGTGGTAATTGCATAGCTATAGTAGTTTACGTCAAGCTTTGATGTTGAATAGTTGTATAGTTGAAtagattatattgtttttaaattgaaaaggtTATGGGGAACAATATGAAAGGCACGAATTAGCAAATTGCATTGTGATTCTAACCATCCTTCATCCACGCCTTCTGCAATTTCATATTGAATTTCATTGAATCACTATGATAGTCACCCTTTAATTCAGAGATGCATTCCTATTAGATACGCGTGTAAATACtggaatttaaaaagcaaacaaaaaaaaacaaaaacaattgtagTTAAGCAAGATTTCACTGGATGAAGGGAAAATGATAAGTTGATATTTTGGGAATAGACTTCATAGCATATCATAAACATTCCCACAAATGATTACTTCAGATTCTTAATATCTCTGAAATGTGCTAGTGACATAGAAGTTCAAAGctcatttaatgttaatttaatgttgaCCTTTATTATGTAGATGACCATGTGGACAATGGACAATCAAAGCACTTGAtgtgaatgtgtatatacagcatgttattatatgaaaatgcatattgtcaGAAATGTATGTTGGTAATTTAAGGAGAAAGGGATGATGTGGAAAACTATAGTCAAAAGCAATTTTACTTTTGGAAGTGCAAGTAATCTAGGTATACATAGACTGGAGTTTTGATATCTGCATCACATTAGTACTTAAAATACAAGACACATGTTCATATTCCATTCAGATGAGTGTGTCCTTTTTATtggcttttattatatttacttacagatttaaaacactgaTACAGTTTATACGGGAATCTTTCTGCTTTTTCAAATTGATGgttgaaatataaagaaacaaaatgctacAGTGACTCATGTGTACTTTTAATGCCATAACCACCATAGTTATGGATAGCATAGAAGAAGTAATACTCTGACTTTTGGGCATTATTCCATTGTACATCGGTCCACATGTAAATCTACATATCTGTGATGCATACAAAAACTGCtaccaaataaagaaaagcaatacaatgACTGgacttgaaatgttttttttcacccctGATTTGTGGGGTGTAAACCTTGGCATAATATATGCTTCCCTTTATCATTTAATGTGCTCAAATTGTAACAAAAGCTT

Function

GO: NA

KEGG:

id description
K20056 GIPC, SEMCAP; PDZ domain-containing protein GIPC

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU181837 lncRNA downstream 28052 11253615 ~ 11254574 (-) True G144587
TU181727 lncRNA downstream 324625 10956085 ~ 10958001 (-) True G144502
TU181728 lncRNA downstream 324625 10956085 ~ 10958001 (-) False G144502
TU181541 lncRNA downstream 1344015 9937980 ~ 9938611 (-) True G144353
TU181471 lncRNA downstream 1531848 9744869 ~ 9750778 (-) True G144295
TU181873 lncRNA upstream 9883 11319126 ~ 11322006 (-) True G144612
TU181875 lncRNA upstream 13340 11322583 ~ 11328481 (-) True G144614
TU181877 lncRNA upstream 13340 11322583 ~ 11328481 (-) False G144614
TU181932 lncRNA upstream 189929 11499172 ~ 11501075 (-) True G144657
TU181934 lncRNA upstream 196435 11505678 ~ 11506002 (-) True G144659
AMCG00004960 mRNA downstream 19795 11254762 ~ 11262831 (-) True AMCG00004960
AMCG00004963 mRNA downstream 34872 11244611 ~ 11247754 (-) True AMCG00004963
AMCG00004961 mRNA downstream 39200 11217636 ~ 11243426 (-) True AMCG00004961
AMCG00004962 mRNA downstream 81626 11196475 ~ 11201000 (-) True AMCG00004962
AMCG00004949 mRNA downstream 119057 11151383 ~ 11163569 (-) True AMCG00004949
AMCG00004973 mRNA upstream 20000 11329243 ~ 11339610 (-) True AMCG00004973
AMCG00004972 mRNA upstream 34089 11343332 ~ 11361553 (-) True AMCG00004972
AMCG00004997 mRNA upstream 103656 11412899 ~ 11438182 (-) True AMCG00004997
AMCG00004999 mRNA upstream 142499 11451742 ~ 11462502 (-) True AMCG00004999
AMCG00004998 mRNA upstream 200977 11510220 ~ 11525189 (-) True AMCG00004998
TU181238 other downstream 2376032 8872885 ~ 8906594 (-) True G144115
TU181227 other downstream 2441638 8836360 ~ 8840988 (-) False AMCG00004894
TU181155 other downstream 2905625 8353989 ~ 8377001 (-) True G144050
TU180667 other downstream 5499442 5736809 ~ 5783184 (-) True G143659
TU180357 other downstream 7166212 4113747 ~ 4116414 (-) False AMCG00004819
TU182156 other upstream 844882 12154125 ~ 12156378 (-) False AMCG00005011
TU182157 other upstream 844882 12154125 ~ 12156378 (-) True AMCG00005011
TU182413 other upstream 2026966 13336209 ~ 13336746 (-) True G145046
TU182803 other upstream 3655336 14964579 ~ 14967623 (-) False AMCG00005077
TU183873 other upstream 7705304 19014547 ~ 19015663 (-) False AMCG00005214

Expression Profile