RNA id: AMCG00004980


Basic Information

Item Value
RNA id AMCG00004980
length 3243
RNA type mRNA
GC content 0.48
exon number 16
gene id AMCG00004980
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 11898180 ~ 11914425 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCGCTCAGCTGGGTCCATTTTAATGAGGGGCACCCTGGGAAACAGGCGACCGGTGGCACTTTTTGAGGTGACGGCCGCTGTTGTGCGTGTTTTGCCCGAATCGGTGCCAGTCGTGACACAAGCCGGACCGGGTTGGACGCGTGTGATGCCAGTGTGAGCCGCGGTGGGCACTTCGAGGGCTGTCTAAACAGTTTCTCGGCAATGTCTTCGGGCAACATGGAAGAAGAGCAGCAGCTGGAAGAGCCCCTGTTTATCCTGGAAAATGGAGAGGTTTACAGAAACCCTACGGAAGTCAAGATGAGTCAGATCGTGCTGCCGTGCCACGCAAACCACTGCGCCGAGCTGAGCGTGGGGCAGCTGCTCAAATGGATGGACTCCACCGCCTGTCTGTCTGCTGAAAGGCATGCTGGGTGCTCGTGTATCACAGCCTCCATGGACGACATCCATTTTGAACACACGATTGGGGTTGGACAAGTAGTAAACATCCAGGCGAAGCTCAACAGAGCTTTCAACTCGAGTATGGAGGTGGGCATCCTGGTGAGCTGCGAGGATCTGTTCAGCGAGCGGCAGTGGAAAGTGTGCAATGCCTTCGCTACTTTTGTGGCCCGACGCACAGATTCAGGGAAGgtccAGCTGAAGCAGATCCTGCCCAGGACCCAGGACGAGCAGATGGAGTACAGTATCGCTGCCGAGAGGCGGAGGATGAGGTTGATACACGCTGACATCATGAAGGACCTGCTGAGCAACGGCCCCGTGTCCAGAGTAGGGGAGTGCCAGGAGTACCAGAACGCGGTACCAGCAGAGAAGACACGGGTGGAGAGTGTGGAGCTGGTCCTGCCCCCTCATGCCAATCACCAGGTCAACACCTTCGGAGGGCAGATCATGGCGTGGATGGAAAATGTGGCCACCATCGCTGCGAGccgCCTGTGCAACGCTCATCCTACTTTACGAACTATTGATATGTTTCACTTCAGAGGGCCTTCTCAAGTTGGGGACCGGGTCATTTTACGGGCCATCGTCAACAATACGTTTAAGAATAGCATGGAGGTTGGTGTGCGTGCGGAGGCCTACCGAGGCAGGGAACCACTGCGCCACATCAACAGCGCCTTCATGACCTTCGAGGTGCTAGACGAAGACAAGAAGCCGCGCACTCTTCCTCGCATCAGACCAGAGCCAGTGGATGGCATGAGAAGGTACAGGGAGGCCATCGCCAGGAAGAAGATCAGACTAGACAGGAAGTATATCATCTCCTGCAAGCAAACAGAAGTGCCGCTGTCTGTCCCATGGGACCCCAGCAATCAGGTGTACCTTAGTTACAACAACGTGTCGGCACTGAAAATGCTAGCGGCGAAGAACAACTGGGTGTTGAGCTCGGAGGAAAATAAGGTCAGTCTGTACACGCTGGAGGAGAACCAGTTCCTGTCGTTCAGAGTGGAGATGAAGGTGGACGTGCCGGCGGAGAGGGTCTTCATCCTGCTGTCAGATCTGAGTCGCAGGCAGGAGTGGGACAGCCATTACAAACAGTGTGATGTGATCAACCAGGTGGACGAAGATGACGTCATCTACCGCGTTGTCACTCCCTCCGTTAGCAAGGACAGCAAGTTCCAGGACTTCGTGCTGCTGGCCTCGAGAAGGCAGCCGTGTGACAAAGGGGATCCTTACGTGATAGCGCTGCGGTCCGTCACCCTGCCCACCCACACTGCCACCAGCGACTGCAACAGGGGCGAGGTGCTCTGTGCGGGATTCACCATTTGGGAAGAATCCAAAACTATAACGAAGATATCTTACTATAACCAAGCAACTCCTGGGGTCATGCCATACATCTCCACTGACATTGCTGGGCTCTCCTCCCGTTTCTACAGCACCTTCTGCGCCTGCAGTAAATTCCTGGAGGAAAACAAGGACGGCTCGCCAGCTGTTCAGTCTGCAGCGCTGTGACACGAGACTTTAGAGAAGAACGGGAAATCGGAAAATGCAACCGTCTATTGTCAATATTAAATTTAGGACCAGAATAATAATCGGCTTCTCTTTTTGTAAACTGACATTAAATATGTCAAGTGGTGCTGATGGTACAGGTTGGTTTGTTTCAGACACTGCTTTTGTGCATTATCACTACATCGGTGTTGGGATAAAATAATCTGGGaccagtacaaaaaaaaaagaagaatccaCAAGAACGCACAGGTAGCTTTTTCACAATTCTGTTTCACACTGAAGAATTTGTACATGACATTTTTCAGTTACACTACCCTCTATTGGTAGAGATTTAAGAGTCATGAATTTTGAAACCAGCCCTTTACATAACCTACAGTAAACATCTTACATGCTGATGGGTTGGGTTAGGCAGGTGTAGCAGTTTCCGCTCACCTATCCTGTAGTTAATCTTCATTCTAAATCTTGtttcagattcttttttttctaccGATATTGAACTTCCAGATCCCTCAGTCATATGAAGAAGCCCTTATCGGTGTCTTCTGAGAGAATATCCTACATATCTTACATTTGGGTGCAACAGTGAATCTAGGCCACAGATACTTCAGCTgtttgagttaaaaaaaatatttaaagtcgAATATTTTTTACCGCTAAGAAATGAACATCACAGTGCAGTGGAATCTATGCTGCCTGTGATTAATGGTGTGCAAACAGGGCTGTGCCGGTAAACCGTACACAGTATTACCAGCCGCTGCGGTAAATTCTTCAGCAGTATATTGATACTAAACTTTGGTCACTAGCACAGCCCTGTGTGTAAATATTGCAATAATGTTGGTGTCTTGTCAACTCCATTTTTTTAGTGCATGCTCAGTTCGGTACCTTTTTTTagatatgtttaaaacaaaaaaaatattttgtacaagattaaaaaaaactgctttaaatgtagGTTTATCATCACTGTAGTGACAAGGGATGGCAACGTTGCACGTCCGATTCACTTCTACCTCTATAACTTAACTTCCCCTCTGTGCCGCCTCTATTTCACTTTGAGTaaaaccagcacacacacacacacaaacacacacacacagggtttgGGAGTTTGTTCATGGAATTATGATATGCTGCagtgatgttttgtttaataattattaaatgtttgtgtaattCTGAACTTGGGAAATTAATATAGTTTTCAAGGGTCTGTGGTCTATTTATGCTTATGTAAGGACAGAAACATGAACAAAAGTTTCATGATTgcacttgaaaataaatatggcaTTTGACTTTatgaaaaacaga

Function

GO: NA

KEGG:

id description
K12417 ACOT11; acyl-CoA thioesteraes 11

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU181947 lncRNA downstream 325770 11571190 ~ 11572410 (-) True G144672
TU181934 lncRNA downstream 392178 11505678 ~ 11506002 (-) True G144659
TU181932 lncRNA downstream 397105 11499172 ~ 11501075 (-) True G144657
TU181875 lncRNA downstream 569699 11322583 ~ 11328481 (-) True G144614
TU182132 lncRNA upstream 95493 12009918 ~ 12010371 (-) True G144821
TU182139 lncRNA upstream 109089 12023514 ~ 12029449 (-) True G144826
TU182205 lncRNA upstream 388154 12302579 ~ 12302836 (-) True G144877
TU182206 lncRNA upstream 388540 12302965 ~ 12303263 (-) True G144878
TU182207 lncRNA upstream 388986 12303411 ~ 12303620 (-) True G144879
AMCG00005002 mRNA downstream 15473 11879855 ~ 11882707 (-) True AMCG00005002
AMCG00005001 mRNA downstream 18925 11852911 ~ 11879255 (-) True AMCG00005001
AMCG00004995 mRNA downstream 62646 11832449 ~ 11835534 (-) True AMCG00004995
AMCG00004996 mRNA downstream 101504 11787635 ~ 11796676 (-) True AMCG00004996
AMCG00005000 mRNA downstream 216714 11669420 ~ 11681466 (-) True AMCG00005000
AMCG00004988 mRNA upstream 66743 11981168 ~ 11984864 (-) True AMCG00004988
AMCG00004990 mRNA upstream 76225 11990650 ~ 11993097 (-) True AMCG00004990
AMCG00004989 mRNA upstream 86686 12001111 ~ 12003204 (-) True AMCG00004989
AMCG00004987 mRNA upstream 96928 12011353 ~ 12019759 (-) True AMCG00004987
AMCG00005011 mRNA upstream 220953 12135378 ~ 12156367 (-) False AMCG00005011
TU181238 other downstream 2991586 8872885 ~ 8906594 (-) True G144115
TU181227 other downstream 3057192 8836360 ~ 8840988 (-) False AMCG00004894
TU181155 other downstream 3521179 8353989 ~ 8377001 (-) True G144050
TU180667 other downstream 6114996 5736809 ~ 5783184 (-) True G143659
TU180357 other downstream 7781766 4113747 ~ 4116414 (-) False AMCG00004819
TU182156 other upstream 239700 12154125 ~ 12156378 (-) False AMCG00005011
TU182157 other upstream 239700 12154125 ~ 12156378 (-) True AMCG00005011
TU182413 other upstream 1421784 13336209 ~ 13336746 (-) True G145046
TU182803 other upstream 3050154 14964579 ~ 14967623 (-) False AMCG00005077
TU183873 other upstream 7100122 19014547 ~ 19015663 (-) False AMCG00005214

Expression Profile