RNA id: AMCG00004981


Basic Information

Item Value
RNA id AMCG00004981
length 1565
RNA type mRNA
GC content 0.46
exon number 7
gene id AMCG00004981
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 12020156 ~ 12024199 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCTTGGCCCAGAGCAGACGCTCAATTACCGgtattcaattacatttgatCCACTTAACTCAAAGTTACTTTTAAGAGAGTATGTACAGTATTCAAATGCATAATCTGATTACAAAAGTAACCAGCAAACAATCAGGTCATTTATGTTGCGTCCCTTTTAAGTGATACAAATGTAGCGGTGGCTGTTCCAATATGACGCGTCAAAGGCGGAAGAAGTTGATATTCGGTCTGCAAAACAAGGCTGGTTGaagtTTCTTTTTTGGTTGGATCAAGAGCAGGTGTTTGAATGGCGGCTGTAGATGATTTGCAGTTTCAAGAGTTTGAGGACGCAGAGAACCTGCTGGCTGCCAACAGGGATGCCACCACAATCAGCATTGGGGATCCCAACGACAAGCCAAGAAAGCAGCGCAGGACTGTGGGGACGGCCTCCAGAGAGGAGGACGATGATCTGCTCGGGAACGACGACTCCGACAAAACGGAGGTGGGGGAGCTGGGGAGCTGTTttacagtggggggggggggttggGTCCTGGACAGAATAAAAGGCTCGCTTGTGCCTTGGCCTGGCAAGAACTTTGTCAGACTGTACGTCCGCAGTAACCCGGATCTCTACGGACCTTTCTGGATTTGTGCCACCCTTGTGTTTGCCATTGCCATCAGTGGAAACATATCTAGTTTCCTGGTGCACCTTGGCCAGCCTGACTACCACTATGTGCCTGAATTTAGGAAAGtaaCAATTGCTGCCACTGCTATCTACAGTTATGCATGGCTGGTTCCTCTGGCACTCTGGGGCTTTCTGATGTGGAGAAACAGCAAAGTCATGAACATAGTGTCTTATTCATTTCTGGAGATTGTCTGTGTCTATGGATATTCCCTGTTTATATACATTCCTGCAGCGGTCTTGTGGATTATTCCTGATGAGTCTGTGAGATGGGTGTCCATCGTGATCGCCATGTGCCTGTCCGGGTCGGTTCTGGTCATGACGTTTTGGCCGGCTGTTCGAGATGACCACCGCAGGATTGCAATAGCAACCGTTTCAACCATTGTAGTTCTTCATGCCTTGCTTGCAGTTGGTTGCAAGGTATGGGgagttgtttttattctgtatagGTCACTTACGTTGAAATGTTTGTcacttttaaaaaaaagagaggaaaaaagtgtTGGAATATATTCAGGTCTGGATTTCTTGACACAACACTAGTCATAACGAGGTATAGACGCATGCTCAACTCCACTTCCTTGTCTAAATCAAATGTCCTGGGCACTTCACATCTGCCCAGACtctccagtgttttttttcttctttgtccTGCATTTGGATCTGCTGTGCTGGGCTGTACAACTGTTATTTTGGTACGGCACTTGCAACTGTGTGAATGTATCCCATCAATGCTGAGGATAGTGTTAGTTTACTTTGGAGGACTTTAATGGAAACTTTGACACCTGTTGTAGACTGCTCTGGAATACTGCCAGTCAGTGTTCAAAAGACTACCTTTCAGGTATAAAACCGCTCGGCTTTGCAGTGCTATCAGATGTCTGACAACTTTTATCATTAGTATCCAC

Function

GO: NA

KEGG:

id description
K22940 YIPF1_2; protein YIPF1/2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU181959 lncRNA upstream 343251 11674239 ~ 11676905 (+) True G144683
TU181958 lncRNA upstream 343251 11675924 ~ 11676905 (+) False G144683
TU181957 lncRNA upstream 346641 11672872 ~ 11673515 (+) True G144682
TU181956 lncRNA upstream 347671 11671555 ~ 11672485 (+) True G144681
TU181955 lncRNA upstream 348714 11669475 ~ 11671442 (+) True G144680
TU182090 lncRNA downstream 75165 12099364 ~ 12176426 (+) False G144788
TU182091 lncRNA downstream 75165 12099364 ~ 12192733 (+) True G144788
TU182111 lncRNA downstream 169927 12194126 ~ 12194338 (+) True G144804
TU182112 lncRNA downstream 172073 12196272 ~ 12196773 (+) True G144805
TU182118 lncRNA downstream 215292 12239491 ~ 12242198 (+) True G144809
AMCG00004985 mRNA upstream 2751 12015575 ~ 12017405 (+) True AMCG00004985
AMCG00004982 mRNA upstream 9962 12008911 ~ 12010194 (+) True AMCG00004982
AMCG00004984 mRNA upstream 13016 12003435 ~ 12007140 (+) True AMCG00004984
AMCG00004986 mRNA upstream 20426 11985260 ~ 11999730 (+) True AMCG00004986
AMCG00004977 mRNA upstream 40734 11956178 ~ 11979422 (+) True AMCG00004977
AMCG00004983 mRNA downstream 4998 12029197 ~ 12037382 (+) True AMCG00004983
AMCG00005008 mRNA downstream 42185 12066384 ~ 12083501 (+) True AMCG00005008
AMCG00005005 mRNA downstream 76861 12101060 ~ 12112928 (+) True AMCG00005005
AMCG00005007 mRNA downstream 126289 12150488 ~ 12155810 (+) True AMCG00005007
AMCG00005006 mRNA downstream 147968 12172167 ~ 12178452 (+) True AMCG00005006
TU181952 other upstream 356788 11662681 ~ 11663368 (+) True G144677
TU180912 other upstream 4289156 7729389 ~ 7731000 (+) False AMCG00004870
TU180621 other upstream 6596035 5423703 ~ 5424121 (+) True G143626
TU180426 other upstream 7648067 4371709 ~ 4372089 (+) True G143471
TU180351 other upstream 7910501 4109022 ~ 4109655 (+) True G143404
TU182286 other downstream 756381 12780580 ~ 12781170 (+) True G144940
TU183002 other downstream 3360044 15384243 ~ 15384612 (+) False AMCG00005105
TU183561 other downstream 5741058 17765257 ~ 17771525 (+) True G145932
TU184056 other downstream 7555374 19579573 ~ 19579807 (+) True G146305
TU184341 other downstream 8158155 20182354 ~ 20184643 (+) True G146519

Expression Profile