RNA id: AMCG00004984


Basic Information

Item Value
RNA id AMCG00004984
length 1905
RNA type mRNA
GC content 0.43
exon number 8
gene id AMCG00004984
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 12003435 ~ 12007140 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCACTGCGAAGGCATTTGTtttgaacaacaaaacaaagatggaGGTGTGGAAGTTGTCCGGGGTTATCTTGAGTTTCTGCTGCTTACTGGTGTGCGCAGCTGCCTCACCCGATATATTTGACGGCGTTTTGGGAAATACAATATCCTGCCATAAGACCTGCCAGATGACGTACAGCCTGCACACCTACCCCCGGGAGGAAGAGCTGTATGCCTGCCAAAGAGGATGCCGACTCTTCTCTATTTGCCAGTTTGTGGGCGATGGAGAGGACTTGAACCACACTAAGTCCGAGTGCGATTCGGCTTGCCGTGAGGCTTACATGCAGTCAGAAGAGCAGTATGCCTGCAACCTGGGGTGTCAGAGCCAGCTGCCCTTTGCTGAGCAGAGACAGGAGCAGTTATTGGCAATGATGCCCAGGATTCACCTTCTGTATCCTCTGACCCTTGTGAGAGGATTCTGGAATGACATGATGAGTTCTGCCCACAATTTTATTACCTCCTCATGGACTTTCTACCTGCAGGCGGATGATGGGAAGGTGGTTATATTTCAGACTGAGCCACAGATCCAGTTCATTCCTCAGTTTGAACTTCAGAAAGATGAGCTGAAGGAAACCTCTCCTGCAAAGACCTCCTATCAACACCTTGACAGCCCAATCTTTAAAGATTACAACAAGGGATTTGTACAAGAACGTGAGACTAATGTTTACCTGGATAACAATGATGTGGACGATGACTACAACTTGTTTAGCTGTCTTTCAAGAAACCCCTGGCTGCCCGGATGGATCTTGACAACCACTCTAGTGCTGTCGGTTCTGGTACTGATCTGGATTTGCTGTGCAACAGTCGCTACTGCTGTGGACCAGTATGTCCCAGCTGAGAAGTTAAGCATCTATGGTGACATGGAGTACATGAAGGACCAGAAGCTTACCCCGTACCCAGCCTCCTCTCTGGTGATCATCAGTTCTGTGGCTGAGGAAGAAGCCGGGCCTTTACCATCAAAAGTCAACCTGAACCAGTCGGATATTTAGCATCTGGAggggtaaaaagaaaaatgaatggggtggggggtgacaACACAATGAGCCTGTGAAACATCAGTCTTATAAGTCTTActcttgtttttctaaattgCGTGGGTTACATGAAGTTTACTGGGTTAAcctattacaattttaattactgATTTCAGGGCTGGCTTGCatcatcctgtttttttttttttttttcttgtcttctaAACCTTGGATTAGGAGAAGAGCGACCAATACTGTTGCTCTTTTGTAGATTTGCACTTTTTTGCAATACACTACCCAATAGTGTCCTGTTTAACCTTGAAGGATTGGTTCTATGGTATGTTTTAGGCCTCTGTTTGCTATAGTTGCAAACTGTTTAATTGTTCTGTGGTTTGTGCTAACCTTTTGGAACAGCTGGCCAACAGCCCAGGTTGTGTTCTGCCGCTGTTAAATTTAACAGATTGTTGAAATGTATGGGATTGGCACTGCCACTGGAAATGTCATATTCATTAGTGTGCTTCATTGATTTCAGTGGCAACAGCGtttactttaaattattgtGTCCCTGTCATTCAGGCCAGTTATctcttatataaaaaaagaaaaacatgcatcagAAGAAGATAAAtaactgaatgaataaataaatgcacctTTGCTTAGACTAAGTCATCAGTGAAATGTTGGAATGGTCAcctggaaataattatttgtacagACCAAAATGTGTGCTGGGTTGTAAATCTTTGCTACTGCAGGTATTAGGAGAGTTTACTATCTCATTATGCCTTTAGATATTTATAGGTATTTTGGCATTCTTGTCTCCACTTTgtaatgtttagttttgttttttctcatttttttcatGATTAAATTTGGGGTTTGTCtttggaaa

Function

GO:

id name namespace
GO:0032266 phosphatidylinositol-3-phosphate binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU181959 lncRNA upstream 326530 11674239 ~ 11676905 (+) True G144683
TU181958 lncRNA upstream 326530 11675924 ~ 11676905 (+) False G144683
TU181957 lncRNA upstream 329920 11672872 ~ 11673515 (+) True G144682
TU181956 lncRNA upstream 330950 11671555 ~ 11672485 (+) True G144681
TU181955 lncRNA upstream 331993 11669475 ~ 11671442 (+) True G144680
TU182090 lncRNA downstream 92224 12099364 ~ 12176426 (+) False G144788
TU182091 lncRNA downstream 92224 12099364 ~ 12192733 (+) True G144788
TU182111 lncRNA downstream 186986 12194126 ~ 12194338 (+) True G144804
TU182112 lncRNA downstream 189132 12196272 ~ 12196773 (+) True G144805
TU182118 lncRNA downstream 232351 12239491 ~ 12242198 (+) True G144809
AMCG00004986 mRNA upstream 3705 11985260 ~ 11999730 (+) True AMCG00004986
AMCG00004977 mRNA upstream 24013 11956178 ~ 11979422 (+) True AMCG00004977
AMCG00004979 mRNA upstream 106751 11890664 ~ 11896684 (+) True AMCG00004979
AMCG00004978 mRNA upstream 113564 11883083 ~ 11889871 (+) True AMCG00004978
AMCG00004992 mRNA upstream 136997 11860415 ~ 11866438 (+) True AMCG00004992
AMCG00004982 mRNA downstream 1771 12008911 ~ 12010194 (+) True AMCG00004982
AMCG00004985 mRNA downstream 8435 12015575 ~ 12017405 (+) True AMCG00004985
AMCG00004981 mRNA downstream 13016 12020156 ~ 12024199 (+) True AMCG00004981
AMCG00004983 mRNA downstream 22057 12029197 ~ 12037382 (+) True AMCG00004983
AMCG00005008 mRNA downstream 59244 12066384 ~ 12083501 (+) True AMCG00005008
TU181952 other upstream 340067 11662681 ~ 11663368 (+) True G144677
TU180912 other upstream 4272435 7729389 ~ 7731000 (+) False AMCG00004870
TU180621 other upstream 6579314 5423703 ~ 5424121 (+) True G143626
TU180426 other upstream 7631346 4371709 ~ 4372089 (+) True G143471
TU180351 other upstream 7893780 4109022 ~ 4109655 (+) True G143404
TU182286 other downstream 773440 12780580 ~ 12781170 (+) True G144940
TU183002 other downstream 3377103 15384243 ~ 15384612 (+) False AMCG00005105
TU183561 other downstream 5758117 17765257 ~ 17771525 (+) True G145932
TU184056 other downstream 7572433 19579573 ~ 19579807 (+) True G146305
TU184341 other downstream 8175214 20182354 ~ 20184643 (+) True G146519

Expression Profile