RNA id: AMCG00004986


Basic Information

Item Value
RNA id AMCG00004986
length 2587
RNA type mRNA
GC content 0.54
exon number 13
gene id AMCG00004986
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 11985260 ~ 11999730 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCGGCGTTATTGACAGGCATCCGCGGCGCCGCTTCCTCAGCAGATGCAGTGCcgggctgaggaggaggaggaggaggaggaggactggCTCCGGCTGAGGCCGCAGGACCCGCTGTCCTCCCAGTGCTGCGGCAGTGGCTGTCGGCCGTGCGTGTTTGACACTTACGAGCGGGACCTGGAGAGATGGACCCGGGCCAGAGAGAGCAGAGACCGGTCCCTTCTCGCCGAGGACCGGGCGGCAGGGTCTGTGGAGGTGTTAACAAGCGACACGTGCCTGTACAGATTCAAGCTGCCAACTGGTGGCAGTCTGGGACTAGGCTTGGGACAGCACCTTGTGTTAAGGGGTGCTGTTGAAGGCCTCGAGGTTCAGAGAGCATACACTCCCATCAGCCCGGTCAGTGCAGAGGGGTACTGTGAGTTTCTCATCAAGGTCTACACAGAAGGGCTGATGTCACATTATATACAGACTTGGAAGGAAGGAGATCTTGTCCAGTGGCGCGGCCCATTTGGAGGCTTTCTCTATAAGCCCAATACGTATGGACAGCTTCTGATGATTGCTTCAGGCACTGGGATAGCACCCATGATCCCCCTCATCCAGCACATAACAGACGACAAAGAGGACGAGACATCTGTCACACTGGTGGGCTGCTTCAGGACGTATAAGGACATCTATATGAGATCCTTTCTGCAGGAACAGTCACGGTTTTGGAACATTACCACTTATTTTGTGCTTAGCGAGGAGGAAAACCTTGACAGTCTTCCCTGGAGTTACCGTGAGAAGACACACCTGGGCCGACTGAACCTGGAGGTGCTGAAGGCTTTGGTGAAGTGTTGTAAGAAACCACCCTTTGCAGTAATATGTGGCTCCATAGCCTTCAATGAAGACACATTCAACCTTCTGCGGAAATTAGGATTGGAAGAGGAGTCCTGTTTTAGGCTCTTGGTGAACCTTTGTGCGGCCAGCAGTCCCTTCAGGGTGATGGTCCCACTGTCCACAGCCCTGGCAGGGGCCACTCTGGAGGGCCTCAAGGCTGTGTCAAAAAAAGGAGTCAAGTGTGGTGGCATCCTCTCCTCACCTAACGGCAACGTATCCAGTCCCAACTTCCCTGGTCTCTACCCTTACGACACACACTGTGCGTGGCTCATCGTGGTGGCAGAGGGCTCCTCCGTCCTGCTCACCTTTCACCATTTTGACCTGGAATACCACGATGACTGTGCATACGATTACGTTAAGATCTACAATGGCATCTCTGAAGACGAGGGGAACCTCCTGGGGACGTTCTGTGGGGACGACTCTCCTCCCCAGTTCACCTCTTCCTGGCACGTCATGTCCCTCATCTTCCACTCAGACAGACATGTGGCACACGAGGGCTTCTCTGTTGGCTACAAGAAAGATGTCTGTGGAGGAGTGCTGATGGGTCTCTCGGGCATCATAGCCAGCCCTGACTACCCTGATAATTACCCCAATAGTGCCGAGTGCTCCTGGACCGTGCGTGTGTCCAACCGCACCGTCGTCAGCCTGGTCTTCCTCGACTTCCAGCTGGAGAATAACGAGGAGTGCAACTTCGACTATGTGGCTCTCTTCGACGGCCCCACGGTCAGCCACAAACACCTGGGAAACTACTGTGGCAGCGACGGGCCCCCCAATACCATCTCCAGCTCCAACCAGCTGCTGGTAGTCTTCAAATCTGACTTCAATATTGGAGGCAGGGGCTTCAAAGCTCATTACTATTCAGggGAATGCCAGCAAATTCTTACAGGCATTAAGGGGAATTTCACTAGCCCTCAGTATCCCAATATCTACCCCAACAACATCAACTGCCACTGGACAGTGAATCTGGCCACAGGATACCGAATCAAGCTGTTCTTCTCCGACATGGGGCTGGAGGACAGGAACAGTCTGACCGATGCCTGCGACTACGACTCCCTGGCTGTCTATGACGGCAGCAGTGAACAAGATGCTCTGCTGGGGCGGTGGTGCGGGTCTGATTTGCCACCCTCTCTGCTCTCCAAATCCAGCAAACTCCTAGTCGTCCTGAACACTGACCGTAACTCAGCCTACAGGGGTTTCTCTGTGTCCTACACTGGAGTGGTTCCAGTCAATGTGAGTTGCTCCAGGACGGACTTCCAGATCCATATCCCCCAGCAGGCCCTGCCACAGTTAGAGCGCTACAATATTTACCTGGGGAGCCCCACCTGTGCCGCTCAGATGACAGCAACGACCTACAAGATCATGGCCAGATTCATGTCCTGCGGCACAAAGTCTCAGAAAAGGAACGACACCATGATGATGGTGAACACTCTCTACATTGACTTCTCTGATGGACATCAGGAGAACATCCAGGAGTATGAGGTGCTGTGTGAACCCAAACGCAAGGAGGCCTCAGTCAACATCATTACAGGGGAGGAGCGCGACCTGCTCAACCAGCTAGCCCAGGGCAAAGAGAACGCGAATGGGGAGAACGCAGACCCCTCTGATTCCGACAGCTTCCGCGGACAGGACACCAGTGACATCGTCTTCATCAGCATCTGTGCTCTAGCTGGTATCCTCATGCTAATTGCCATTATTGGCTTAGTTCTGCTTTAA

Function

GO: NA

KEGG:

id description
K24792 CDCP2; CUB domain-containing protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU181959 lncRNA upstream 308355 11674239 ~ 11676905 (+) True G144683
TU181958 lncRNA upstream 308355 11675924 ~ 11676905 (+) False G144683
TU181957 lncRNA upstream 311745 11672872 ~ 11673515 (+) True G144682
TU181956 lncRNA upstream 312775 11671555 ~ 11672485 (+) True G144681
TU181955 lncRNA upstream 313818 11669475 ~ 11671442 (+) True G144680
TU182090 lncRNA downstream 99634 12099364 ~ 12176426 (+) False G144788
TU182091 lncRNA downstream 99634 12099364 ~ 12192733 (+) True G144788
TU182111 lncRNA downstream 194396 12194126 ~ 12194338 (+) True G144804
TU182112 lncRNA downstream 196542 12196272 ~ 12196773 (+) True G144805
TU182118 lncRNA downstream 239761 12239491 ~ 12242198 (+) True G144809
AMCG00004977 mRNA upstream 5838 11956178 ~ 11979422 (+) True AMCG00004977
AMCG00004979 mRNA upstream 88576 11890664 ~ 11896684 (+) True AMCG00004979
AMCG00004978 mRNA upstream 95389 11883083 ~ 11889871 (+) True AMCG00004978
AMCG00004992 mRNA upstream 118822 11860415 ~ 11866438 (+) True AMCG00004992
AMCG00004991 mRNA upstream 135019 11841166 ~ 11850241 (+) True AMCG00004991
AMCG00004984 mRNA downstream 3705 12003435 ~ 12007140 (+) True AMCG00004984
AMCG00004982 mRNA downstream 9181 12008911 ~ 12010194 (+) True AMCG00004982
AMCG00004985 mRNA downstream 15845 12015575 ~ 12017405 (+) True AMCG00004985
AMCG00004981 mRNA downstream 20426 12020156 ~ 12024199 (+) True AMCG00004981
AMCG00004983 mRNA downstream 29467 12029197 ~ 12037382 (+) True AMCG00004983
TU181952 other upstream 321892 11662681 ~ 11663368 (+) True G144677
TU180912 other upstream 4254260 7729389 ~ 7731000 (+) False AMCG00004870
TU180621 other upstream 6561139 5423703 ~ 5424121 (+) True G143626
TU180426 other upstream 7613171 4371709 ~ 4372089 (+) True G143471
TU180351 other upstream 7875605 4109022 ~ 4109655 (+) True G143404
TU182286 other downstream 780850 12780580 ~ 12781170 (+) True G144940
TU183002 other downstream 3384513 15384243 ~ 15384612 (+) False AMCG00005105
TU183561 other downstream 5765527 17765257 ~ 17771525 (+) True G145932
TU184056 other downstream 7579843 19579573 ~ 19579807 (+) True G146305
TU184341 other downstream 8182624 20182354 ~ 20184643 (+) True G146519

Expression Profile