RNA id: AMCG00004990


Basic Information

Item Value
RNA id AMCG00004990
length 639
RNA type mRNA
GC content 0.57
exon number 4
gene id AMCG00004990
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 11990650 ~ 11993097 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTTTCAAGAGGCAACAAGGTCATATCCAGAACGCCGGACAAGGAGAAGAAGGACAGAGGCCATCACATTGTCAAAGAGCCCTCAGTTGTGTCGGCTCCCTCCGTGGGCTACAGGCCCTCCAGAGTGGCCCCTGCCAGGGCTGTGGACAGTGGGACCATCACCCTGAAGGGACTGCTGGCCGCACAAAGGTTCACCAAGAGCCTGAAGGAGCGGACAGCTTTAAAAATAGCCACCAAGAAAAGCAGCGGGTCCCACCTGCATAAGCCTGCCCCGGTTACTGATGAAAGGGTCCCTGACACCTCCTCCAGACCCCAAGAGAAGTTCTCCTGTGCTCAAGCCCAGCAGTTGGTGAAGGGCTTATTGTGGTCTAAGTTGGAGGGAGTCTCCTATGAGGCCAAGCTGTGCACCAGGTTGACCCAGGAGCTGAGCGAAGAGCTGAAAGGTCTAGTGAAGACAGTGTGCCCACCGCGGTACAAGATGGTGTGTGTGGTCACCCTAGGTAAGAAAGCCAGGGAGGATATCTTGGTGGCCAGCCGCTGCCTGTGGGACCCCCACGCAGACAGCTACACCTCCTTCACCTACGAGAGCACCACCCTGTTCTGTGTGGCCACCGTCTTTGCAGTGTACTGCGAGTGA

Function

GO:

id name namespace
GO:0015629 actin cytoskeleton cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU181947 lncRNA downstream 418240 11571190 ~ 11572410 (-) True G144672
TU181934 lncRNA downstream 484648 11505678 ~ 11506002 (-) True G144659
TU181932 lncRNA downstream 489575 11499172 ~ 11501075 (-) True G144657
TU181875 lncRNA downstream 662169 11322583 ~ 11328481 (-) True G144614
TU182132 lncRNA upstream 16821 12009918 ~ 12010371 (-) True G144821
TU182139 lncRNA upstream 30417 12023514 ~ 12029449 (-) True G144826
TU182205 lncRNA upstream 309482 12302579 ~ 12302836 (-) True G144877
TU182206 lncRNA upstream 309868 12302965 ~ 12303263 (-) True G144878
TU182207 lncRNA upstream 310314 12303411 ~ 12303620 (-) True G144879
AMCG00004988 mRNA downstream 5786 11981168 ~ 11984864 (-) True AMCG00004988
AMCG00004980 mRNA downstream 76225 11898180 ~ 11914425 (-) True AMCG00004980
AMCG00005002 mRNA downstream 107943 11879855 ~ 11882707 (-) True AMCG00005002
AMCG00005001 mRNA downstream 111395 11852911 ~ 11879255 (-) True AMCG00005001
AMCG00004995 mRNA downstream 155116 11832449 ~ 11835534 (-) True AMCG00004995
AMCG00004989 mRNA upstream 8014 12001111 ~ 12003204 (-) True AMCG00004989
AMCG00004987 mRNA upstream 18256 12011353 ~ 12019759 (-) True AMCG00004987
AMCG00005011 mRNA upstream 142281 12135378 ~ 12156367 (-) False AMCG00005011
AMCG00005010 mRNA upstream 163483 12156580 ~ 12159972 (-) True AMCG00005010
AMCG00005009 mRNA upstream 170733 12163830 ~ 12172230 (-) True AMCG00005009
TU181238 other downstream 3084056 8872885 ~ 8906594 (-) True G144115
TU181227 other downstream 3149662 8836360 ~ 8840988 (-) False AMCG00004894
TU181155 other downstream 3613649 8353989 ~ 8377001 (-) True G144050
TU180667 other downstream 6207466 5736809 ~ 5783184 (-) True G143659
TU180357 other downstream 7874236 4113747 ~ 4116414 (-) False AMCG00004819
TU182156 other upstream 161028 12154125 ~ 12156378 (-) False AMCG00005011
TU182157 other upstream 161028 12154125 ~ 12156378 (-) True AMCG00005011
TU182413 other upstream 1343112 13336209 ~ 13336746 (-) True G145046
TU182803 other upstream 2971482 14964579 ~ 14967623 (-) False AMCG00005077
TU183873 other upstream 7021450 19014547 ~ 19015663 (-) False AMCG00005214

Expression Profile