RNA id: AMCG00004992


Basic Information

Item Value
RNA id AMCG00004992
length 3585
RNA type mRNA
GC content 0.46
exon number 5
gene id AMCG00004992
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 11860415 ~ 11866438 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAAAATGTGTGGGGAGCATACCCAGTCTCCAGACATGTATTTCAGGTACAGCCCAGCTCAGACACCAGCCTCAAAGAGGACGATGATGCACCCAACATCAAAAGATTGTTCCTGGTGTTGCTGACTTCACTCGCACATGCTCAGCTCAAGGATTTCTGTCCTGCCTCTTGCTTGGTGTGCTCAGAAGATGTCATCATTTGTCAGAGGCTTACTTACGTAATAGATCCCCCTCTGACTGCCAAGGCTCTGATCTTCACAGACGGAAACATCGACTCTGTGGACAATGGCACTTTTTCCTACCTGCCCAATATGACCCTGCTTGGCCTCAGCAATAACATCATAGCAACCATTGAGGAGAACGCTTTCCAGAACCTTACCTTCTTGAAAACCCTGCTGCTGGACCACAACCAGATCCACAGTTGTGACATTCAGGATACAACCTTCACCCAGCTTCCAAAACTAGAGACCTTACAACTCGGTAACAATATCCTACAAAGCATTGACGGGAGCTGGTTTAAAGACTTGAGGAACTTGGTGAATTTGCAACTGGAAGGAAATCGTATTTCCAGACTAGACTGGGATACCTTTGCAAATTCCAGCCTCGGGAATCTGGAGACCCTAGATTTGTCCGATAATCTGATCACTTATGTAGCTAAAAACAGCTTTGTGAGTCTTCCTCGCCTGCGCAGGTTAGACCTATCCAGAAACCAGCTGACCGTCATTCCAGATGCCTTTTCATACCTCTCCTGGCTCTCTGCTCTCAACCTCGACATCAACCAGTGGAACTGCACATGTGAGCTGAAGGAGCTGTCTGAATTCCTCAGCAGCTACATCCAGAACCCGGACAAGATCCTGTACAACGGCAAGCGGCTGATCTGTCAGAGCACCGACAACCCCGCCGTACAAACTATCCTACAGCTAACCGAGTCCAACTGTGTGCCACCCAATGAGAACATCAACATCAATATCAAATACAAAGACTTCAGCCAATACAAAAGAGACATCTCTCTAACAGGCATCTTTTGCTTTTTAGGAGCAATAGGGCTTGAATTGACCTTGCTTTACTGCATCTACCACAAACTGAAGCGAAACAAAAGCAAGAGGCATGGAAGTGAGGAGGAAATAGTCTCCGCCAGCAGCACTGTTGCAGATGCAAAGACCCCCCAGTGCACTTTTACTGAAGACAACGAGGTTCAAATCCTTTCCATCGTTCACCCTGGAAGTGAACCCCAACTGATGCAACCAAACAGAACCGGTGCCCAGGACAGGACAGGCTACAGGCAGAGGGGCATCAGAGAGATGGCAACCTCTGACCGAGCAGAGATGAAACCGGCTAGACTACAGCACTATTTTGCATGTCTGAACTGTAACCTTGTACAGTCAGTCTCAGGGCAGGCAGATGGGAACGGGGGAATTGACAATTATAGCAGTGTTGTTTTGCAGAACGGCCGTCGGATAGCAACCAACCCCAGCCATCaggaaagacagacacagagggaggAGATGCAGAGAGACCTACCACAGCATGCCCTGAGGTTTAATGAAGGTCAGCCTAAAAACATCCACTCCCTGCCAGACTACCTCACGATTAACTGTGTGCACTGTCACACAACCTATGAATACAGGAGGGAGGGTAGTAAAGAAGGAAACAGCAGAGAGGAAAAGAACATTGTGAACACCCCGGAACCGGTGCACAGGAAAAAACAGTTCGCTATGAAGACAAAGCTGTACAGAGAAAGAAACCATGATAACACACATCACCCCATAGATTTTGATAAAGATGTTGATGTAACCCAGACTGGGTCACCAAGAATCAAATTAGCACAGGTGTCGAAGAGTGTCACTTTTAATTTGCCAGTCTCCGATGTGCATCTCATTGCCGCTCGAAAGAAAAAAtcttataataaagaaaaaactaaaagtgacTACCAAGATAATGACTTGGTGAACAACAGCTTAAAAACCATCCCAAACATCAAAGATAAGGAAAGGCCGAGAAGTTCATCTGGCAGGACCCCAAAAAGGGAAAAGGTTGAGAAGGGGTCCAGTTTTAAGAAGCACAAACACAGAGTTCAATCGaacagtttattgaaagttaaGATCAACTTGAACCCTATCCGGAAAAACAGAATCAACCCAAATAAGAAAGCAAGTGAAGCGGATATGCAGCAGGAGCAGGTCAAAGAAGAAGCAACCAGCACAACTGCTACTAAAGACAAATCTCCTCAGAGAAAAAGACACCGAGATAAAATTGACAAAGATGTCCCTGTCCCTTCCCAGCCCAAGGAGACTCTAATTCCAcaggcagaaaagaaaaagaagaaaagatccAAAAAAACTCCCATCAACGACGACAATCTCAGCAAAGCAGCTCCGGAAAATAACCCTTGTGTGGATCAGTCAGCAGAAGAACAGGTTAAAGCCCCTAAACGTAAATCTACCAAGATGGATGAAATACCATCCTCTCCAGAAAAGGGGTCTAAAGATGCAATGTCCTTATCAGTCTCACTAAAGGAAATGGACCATCCCCAAAAAGAGGATACAGAAAATGGGGAGGACTACCTCAAGGACAATATCAACACAGATAATCGCAACGAATGTCAGACTAGTTCTCTGGAGTTACAAAAGGAAGTAAATGCAGAAGATCGATTGGAAGAAACTCCACAAGACAGAACGTCCTCAAACAGAGATCAGACACCTTCCAGGACTGATCTGAAAACTGAACACCTTAATGACACAATTCTAGAGGTTCAAATGCCCACTGAGGAACCACAGAAAAATGAGGCCCAGAAGTCTGATATACTCCAGCCCAGCACTGAAGAGATGGTTGTAATCCTTCCCTCTGAGGCCCAGGGAGAAGGGCTTACACAGGAACTGGGCTTGGAGCAGCTCCCTGCAAAACTAACACAGCTACCTGAACAGGAAGAGAGTGACAGCAAAGAAGTCAGcagtcaacaacaacaaactgtcAATCAGGACCCAACACCCACCAAAGCTGATCAACATGAAAATGTTTCAGAGAACGAGTTGGCTGTGGAGAATAAAACCGCAGCAGACGGCACTGATAAACACGATGGCAGCCAGACCCAGGGTGGCAGTCAAGATGAAGAGCCCACTGTGACAAATGCTGTGGCTCAAGTTGAAAGCATACATGAATCTGACATCAAAGCATTGCAGGAAGCAGGAAACGCAGGGCTCAAACCTGCGCAAAATGAGCTGGATGGCAGTTCCAGTGAAAGGTCGGCTCTCACAGAATCACAGACAGACTTGCCATCTGCCAAACCTGAAAGTGGCAGCCAAGACCCTGCAGAGGTGTCATCTGATAGGGAGAATCActccaacaacaacagcacCTCCTCCTCAGTTACCCCCGTCCACGCAGAAGACACTCTGCAGTCTACAATATCTGTAATACCAACAGAGGCTGGGAAAGACCTTGAGGATCTGCCTGCTTCCAGCGTTAGTATACTACAAGAGTACGTTCCTTCAGGAGAAGGCTCTCCGAAAAGGAAGATCAGGCTCATACTTCCTGAGAAAACAAGTAATCGGCCACAGACTGCACTAGACAAGAAGATACGATAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU181959 lncRNA upstream 183510 11674239 ~ 11676905 (+) True G144683
TU181958 lncRNA upstream 183510 11675924 ~ 11676905 (+) False G144683
TU181957 lncRNA upstream 186900 11672872 ~ 11673515 (+) True G144682
TU181956 lncRNA upstream 187930 11671555 ~ 11672485 (+) True G144681
TU181955 lncRNA upstream 188973 11669475 ~ 11671442 (+) True G144680
TU182090 lncRNA downstream 232926 12099364 ~ 12176426 (+) False G144788
TU182091 lncRNA downstream 232926 12099364 ~ 12192733 (+) True G144788
TU182111 lncRNA downstream 327688 12194126 ~ 12194338 (+) True G144804
TU182112 lncRNA downstream 329834 12196272 ~ 12196773 (+) True G144805
TU182118 lncRNA downstream 373053 12239491 ~ 12242198 (+) True G144809
AMCG00004991 mRNA upstream 10174 11841166 ~ 11850241 (+) True AMCG00004991
AMCG00004993 mRNA upstream 19718 11838946 ~ 11840697 (+) True AMCG00004993
AMCG00004974 mRNA upstream 78270 11759921 ~ 11782145 (+) True AMCG00004974
AMCG00004975 mRNA upstream 103239 11717322 ~ 11757176 (+) True AMCG00004975
AMCG00004976 mRNA upstream 144366 11682833 ~ 11716049 (+) True AMCG00004976
AMCG00004978 mRNA downstream 16645 11883083 ~ 11889871 (+) True AMCG00004978
AMCG00004979 mRNA downstream 24226 11890664 ~ 11896684 (+) True AMCG00004979
AMCG00004977 mRNA downstream 89740 11956178 ~ 11979422 (+) True AMCG00004977
AMCG00004986 mRNA downstream 118822 11985260 ~ 11999730 (+) True AMCG00004986
AMCG00004984 mRNA downstream 136997 12003435 ~ 12007140 (+) True AMCG00004984
TU181952 other upstream 197047 11662681 ~ 11663368 (+) True G144677
TU180912 other upstream 4129415 7729389 ~ 7731000 (+) False AMCG00004870
TU180621 other upstream 6436294 5423703 ~ 5424121 (+) True G143626
TU180426 other upstream 7488326 4371709 ~ 4372089 (+) True G143471
TU180351 other upstream 7750760 4109022 ~ 4109655 (+) True G143404
TU182286 other downstream 914142 12780580 ~ 12781170 (+) True G144940
TU183002 other downstream 3517805 15384243 ~ 15384612 (+) False AMCG00005105
TU183561 other downstream 5898819 17765257 ~ 17771525 (+) True G145932
TU184056 other downstream 7713135 19579573 ~ 19579807 (+) True G146305
TU184341 other downstream 8315916 20182354 ~ 20184643 (+) True G146519

Expression Profile