RNA id: AMCG00004995


Basic Information

Item Value
RNA id AMCG00004995
length 717
RNA type mRNA
GC content 0.45
exon number 6
gene id AMCG00004995
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 11832449 ~ 11835534 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCCGCCGAAAACACATTCAGACAATGGAAAAAACAGTGCTTAAGCAAAATGGATTTCAGCAAGAAGGGAAATGTCGATGAGCACATATTACACATTGTTGGTTTTATTAACGAATCAAAAAGTTACTTCACTACCAGTTCGTGTTCTGGACGAATAATATTGATAGATGGGATCTGTGACAGTCCTGACGTGCAGAAACAGAACTGCTCCTGGCTCTTTGTTACCCACAGCAAGTGCGAGAAGAAAGATGTGATGTCTGGGGTGGAGCGTGCCTGTGGAGatgctgtatttaaatttgaaccATTTGTGCTACATGTGCAGTGTAAACGCCTGGAAGATGCACAGCTCCTGcACTCCGTAGCGATAAATGCAGGCTTTAGGAACTCCGGCATTACTGTTggcaagaaaggaaaaataatcatgGCTGTGCGGAGTACACACTGTCTTGAAGTCCCCCTCAGCCATAAAGGACATGTCCTAGTTAACGAGCAGTACATTGACTTCCTGGTTGAAGTAGCTAAtaagaaaatggaagaaaaccAGCGAAGAATAGAAAGGTTCTACTGCTGTCTACAGTCTGCTGTGGCGGCCGAAAACTCCCTTTGTATGAACACAGACGCCACTACGGACAAATCCACATACACTCGCAGAAGAAGGAGAACGCAGGACAAAGCCCCAAAAGCTTCCTCTCAGAGTCCGGAGGATGCAGTTTAG

Function

GO:

id name namespace
GO:0008033 tRNA processing biological_process
GO:0032259 methylation biological_process
GO:0008168 methyltransferase activity molecular_function

KEGG:

id description
K15450 TYW3; tRNA wybutosine-synthesizing protein 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU181947 lncRNA downstream 260039 11571190 ~ 11572410 (-) True G144672
TU181934 lncRNA downstream 326447 11505678 ~ 11506002 (-) True G144659
TU181932 lncRNA downstream 331374 11499172 ~ 11501075 (-) True G144657
TU181875 lncRNA downstream 503968 11322583 ~ 11328481 (-) True G144614
TU182132 lncRNA upstream 174384 12009918 ~ 12010371 (-) True G144821
TU182139 lncRNA upstream 187980 12023514 ~ 12029449 (-) True G144826
TU182205 lncRNA upstream 467045 12302579 ~ 12302836 (-) True G144877
TU182206 lncRNA upstream 467431 12302965 ~ 12303263 (-) True G144878
TU182207 lncRNA upstream 467877 12303411 ~ 12303620 (-) True G144879
AMCG00004996 mRNA downstream 35773 11787635 ~ 11796676 (-) True AMCG00004996
AMCG00005000 mRNA downstream 150983 11669420 ~ 11681466 (-) True AMCG00005000
AMCG00005003 mRNA downstream 213174 11603594 ~ 11619275 (-) True AMCG00005003
AMCG00004994 mRNA downstream 252263 11577070 ~ 11580186 (-) True AMCG00004994
AMCG00004998 mRNA downstream 307260 11510220 ~ 11525189 (-) True AMCG00004998
AMCG00005001 mRNA upstream 17377 11852911 ~ 11879255 (-) True AMCG00005001
AMCG00005002 mRNA upstream 44321 11879855 ~ 11882707 (-) True AMCG00005002
AMCG00004980 mRNA upstream 62646 11898180 ~ 11914425 (-) True AMCG00004980
AMCG00004988 mRNA upstream 145634 11981168 ~ 11984864 (-) True AMCG00004988
AMCG00004990 mRNA upstream 155116 11990650 ~ 11993097 (-) True AMCG00004990
TU181238 other downstream 2925855 8872885 ~ 8906594 (-) True G144115
TU181227 other downstream 2991461 8836360 ~ 8840988 (-) False AMCG00004894
TU181155 other downstream 3455448 8353989 ~ 8377001 (-) True G144050
TU180667 other downstream 6049265 5736809 ~ 5783184 (-) True G143659
TU180357 other downstream 7716035 4113747 ~ 4116414 (-) False AMCG00004819
TU182156 other upstream 318591 12154125 ~ 12156378 (-) False AMCG00005011
TU182157 other upstream 318591 12154125 ~ 12156378 (-) True AMCG00005011
TU182413 other upstream 1500675 13336209 ~ 13336746 (-) True G145046
TU182803 other upstream 3129045 14964579 ~ 14967623 (-) False AMCG00005077
TU183873 other upstream 7179013 19014547 ~ 19015663 (-) False AMCG00005214

Expression Profile