RNA id: AMCG00004997


Basic Information

Item Value
RNA id AMCG00004997
length 1432
RNA type mRNA
GC content 0.53
exon number 8
gene id AMCG00004997
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 11412899 ~ 11438182 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTGATGCGGACAGAGATGAAGAAGAAGTTTTCTATGACATAAGTGTAACTGTTGACAACAAGTTGTTTCCCACCAAAGAACCCGTGGCAGGGCCCAGTGAACTTGACCTCAGTCTTCTTGTGGATTCTGCCGACTCTGCGGATATCTGCTCACAATTTGAAGAGCAGCCTGAAGATGATTTTTCTGCATATGGAGAAGATAATTTTGAagAGGAGATAAAGAAGTTGAAGATCGTCTTTGTGACAGGTGGGCCCGGCTCGGGGAAGGGCACGCAGTGTGAGAAGATAGCGGAGAAGTACGGCCTCACGTCACTGTCCGTGGGGGACCTCCTGCGAGGCGAGCTGCAGGCGGACTCAGAGCGGAGCTGCTTCCTCAAGGACATCGTTGAACGTGGAGAGCTGCTGCCCATGgagctgctgctggagctggtgAGGGAAGCCATGGCTGCTAGTCTGGACAGCACCAAGGGCTTCGTGATGGACGGCTTTCCACGAGATGTGAAGCAGGGAGAGGAGTTTGAAGCCAAGATTGCACCCCCCAGCCTCGTCCTGGTGATGGACTGCTCAGCCGAGACTATGTCCACGCGGCTGCAGCACCGGCCCCAGTCCAGCCCCCGCCCCGACGACGGCAGAGACGCCATCCGCCGGAGACTGGAGAGCATCAGTGGCAGCAGCATGGAGACCGTCGCCGCCTTCTACGAGCAGCGGAGACTTTTACACAAGATCAACGCGGAGAAGCACCCCGAGGAAGTGTTCCAGCAGGTGTGCCAGGTGCTGGACTCCCACTAGAGGTCCGGCTCAGACAGAGCAGTGCCGCCTCCGGGAGGAAGGCCGTCCGAGAGCCGCCACGCGGGCACCGTCCACACGGGGACCCACGCACCTGATCACCGCTGCTCGCCCAAGCCAACGACGCTTCAGAAGACTAGTGTCACATATTTTGGAAAGTAATGCATGTCTGCGCTCACTCCTAGGAACTCCGCATTCTAACCAAGACTCCAGCGATGTGTTGCACTACAGTGGTGAAAACAATGACCGTTAATGTCGTCGTCGTCATCGTCATTCGATTCGTAAGGTTCCTTCATCACTAAGCCAACCCTGCCATCACCTCCCACTGCCCCCGAAACAAGAGCATCAGTGCAGCCTAATGTGTGTCAAGTATCGCATCCATCACAACCACGCTGCTTCAAACACGCAAGTGAGAACTGAATAAAATGGGTCCGAGTGTGGCTTCACAAAGACTAACACAAATGTCAAACTATGTCAGACTGCTTTTAGGCACCAGTATCGGTAACTGTTGATAATTGTTGCCAGTCCAGCTTTGCTGCAGTTTTGATGCATGAACAGCGCTAAGTGTCACAAGTAAACTTTACACTTTTTGTGTTATATAAACTTCTTTATGAAatgacagatatatatatatatatatccatgt

Function

GO:

id name namespace
GO:0044237 cellular metabolic process biological_process
GO:0016301 kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU181875 lncRNA downstream 84418 11322583 ~ 11328481 (-) True G144614
TU181877 lncRNA downstream 84418 11322583 ~ 11328481 (-) False G144614
TU181873 lncRNA downstream 90893 11319126 ~ 11322006 (-) True G144612
TU181837 lncRNA downstream 158325 11253615 ~ 11254574 (-) True G144587
TU181728 lncRNA downstream 454898 10956085 ~ 10958001 (-) False G144502
TU181932 lncRNA upstream 60990 11499172 ~ 11501075 (-) True G144657
TU181934 lncRNA upstream 67496 11505678 ~ 11506002 (-) True G144659
TU181947 lncRNA upstream 133008 11571190 ~ 11572410 (-) True G144672
TU182132 lncRNA upstream 571736 12009918 ~ 12010371 (-) True G144821
TU182139 lncRNA upstream 585332 12023514 ~ 12029449 (-) True G144826
AMCG00004972 mRNA downstream 51346 11343332 ~ 11361553 (-) True AMCG00004972
AMCG00004973 mRNA downstream 73289 11329243 ~ 11339610 (-) True AMCG00004973
AMCG00004971 mRNA downstream 103656 11282626 ~ 11309243 (-) True AMCG00004971
AMCG00004960 mRNA downstream 150068 11254762 ~ 11262831 (-) True AMCG00004960
AMCG00004963 mRNA downstream 165145 11244611 ~ 11247754 (-) True AMCG00004963
AMCG00004999 mRNA upstream 13560 11451742 ~ 11462502 (-) True AMCG00004999
AMCG00004998 mRNA upstream 72038 11510220 ~ 11525189 (-) True AMCG00004998
AMCG00004994 mRNA upstream 138888 11577070 ~ 11580186 (-) True AMCG00004994
AMCG00005003 mRNA upstream 165412 11603594 ~ 11619275 (-) True AMCG00005003
AMCG00005000 mRNA upstream 231238 11669420 ~ 11681466 (-) True AMCG00005000
TU181238 other downstream 2506305 8872885 ~ 8906594 (-) True G144115
TU181227 other downstream 2571911 8836360 ~ 8840988 (-) False AMCG00004894
TU181155 other downstream 3035898 8353989 ~ 8377001 (-) True G144050
TU180667 other downstream 5629715 5736809 ~ 5783184 (-) True G143659
TU180357 other downstream 7296485 4113747 ~ 4116414 (-) False AMCG00004819
TU182156 other upstream 715943 12154125 ~ 12156378 (-) False AMCG00005011
TU182157 other upstream 715943 12154125 ~ 12156378 (-) True AMCG00005011
TU182413 other upstream 1898027 13336209 ~ 13336746 (-) True G145046
TU182803 other upstream 3526397 14964579 ~ 14967623 (-) False AMCG00005077
TU183873 other upstream 7576365 19014547 ~ 19015663 (-) False AMCG00005214

Expression Profile