RNA id: AMCG00005001


Basic Information

Item Value
RNA id AMCG00005001
length 6281
RNA type mRNA
GC content 0.43
exon number 26
gene id AMCG00005001
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 11852911 ~ 11879255 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTCAGACATTCCATTTGGAGACGAGTTATTTTTAGCTGGTGGCCATGATACCAGGTTTATCAGCAGGACTGCCATCGCGCTCGAGGAAAGAATTATATGACTGCCTGTCTTGCGGTTTTGGACTGTTTTCCACTAAAGCAAAGACATTGCGACTAAAGGAACGCCTCAATGGGAAATTATAAATCAAGGCCAACACAGACTTGTACAGACGAATGGAAGAAGAAAGTGAGCGAGTCCTATTCTGTAATAATAGAAAGGTTGGAGGATGATCTGCGTATCAAAGAAAGTGAGCTGATGGAACTGAAGCATGTCTTCAGCTCAGATGAAGCTTTCAATAAAGTGAACTTAAACTATCGTACAGAAAGTGGCCTGTCCTTGCTGCATCTCTGCTGTATATGTGGAGGTAACAAAGCTCATATCAGGACCCTCATGCTAAAAGGACTTCGTCCATCGCGGCTGACACGGAACGGGTTTACTGCTTTGCATTTGGCTGCGTACAAGgACCATGCGGAGCTGGTGACTGCCCTGCTGCACGGAGGGGCTGATATCCAGCAGGTTGGCTATGGAGCCCTCACTGCTCTTCACATTGCTACTGTAGCCGGCCATCATGAGGCTGTGGACATTCTTCTTCAGCACGGAGCCTATGTTAATGTTCAGGACGCTGTGTTTTTCACTCCTCTACATATTGCAGCCTACTATGGCCATGAGCAGGTGACTAGACTGCTGTTGAAGTTCGGGGCTGATGTGAATGTGAGTGGGGAAGTGGGCGACCGGCCCCTGCACCTAGCGGCAGCCAAAGGCTTTCTCAACATTGTCAAGCTCCTGATGGAGGAAGGCAGCAAGACTGAGGTGAACGCCCAGGACAACGAGGACCACGTTCCTCTTCACTTCTGCGCACGGTTTGGCCATCATGAGGTTGTGCACTTCCTGCTGCAGGGCAACTTCGAGGTCCACCCCCACTCTGTTAACATCTATGGCGATACTCCTTTACACCTGGCCTGCTACAATGGGAAGTTTGATGTAGTGAAGGAGCTCATTCAGCTGTCTGGAACTGAAAGCCTGACAAAGGAGAATATTTTCAGTGAAACAGCTTTTCACAGTGCCTGCACCTATGGGAAAAGCATTGAGATGGTGAAGTTTATGCTCAGCCAGAATGCGATGAGCATCAATCACCAAGGCAGAGATGGACATACAGGCTTGCACAGCGCCTGCTTCCACGGTCACATCCGTCTGGTCCAGTTCCTGTTAGACAATGGAGCTGACATGAACTTGGTTGCCTGTGATCCCAGCCGATCCAGTGGGGAGAAAGATGAGCAGACGTGTTTAATGTGGGCATATGAGAAAGGTCATGATGCCATCGTCACACTGCTGAAGCACTACAAACGACCACAGGACGAATCTCCTTGTAATGAATATTCGCAGCCAGGTGGAGATGGCTCCTATGTCTCTGTCCCATCTCCTCTAGGAAAGATCAAGAGCATGACTAAAGAAAAGGCTGACGTTCTCCTGCTTCGAGCCAGCCTGCCCTCACACTTCCACCTCCAGCTGTCAGAACTGGAATTTCATGAAATAATAGGATCAGGTTCATTTGGAAAGGTCTACAAAGGACGATGTCGGAACAAAATTGTAGCGATCAAAAGGTATCGAGCAAATACGTACTGCTCAAAGTCTGACGTGGATATGTTTTGCCGCGAGGTTTCGATTCTCTGCCGCCTCAATCACCCCTGTGTGATCCAGTTTGTTGGCGCCTGTCTGGACGACCCCAGCCAGTTTGCTATTGTCACTCAGTACGTCTCGGGAGGGTCACTGTTCTCACTGCTGCATGAACAGAAGAGGATTATAGATCTTCAGTCCAAACTCATCATTGCCATTGATGTGGCTAAAGGCATGGAATACCTGCACAACCTTACCCAGCCAATCATCCACAGAGATCTGAACAGCCACAATATCCTGCTTTATGAAGATGGCCATGCTGTGGTTGCTGATTTTGGAGaATCCAGATTCCTATTGTCCATGGATGAAGACAATATGACCAAACAGCCTGGGAACCTGCGGTGGATGGCTCCAGAGGTGTTCACTCAGTGTACCCGCTACACTGTCAAGGCTGACATGTTCAGCTACGCCCTGTGTCTCTGGGAGCTGCTGACAGGAGAGATCCCGTTCGCTCATCTCAAACCAGCGGCAGCAGCTGCAGACATGGCCTATCACCACATCAGACCGCCCATCGGCTACTCCATCCCCAAGCCCATCTCCTCGCTGCTCATGAGGGGCTGGAATGTGTGTCCAGAGGAAAGACCAGAATTCTCTGAAGTAGTGGCCAAACTGGAGGAGTGTCTGTGTAATGTTGAGcTGATGTCCCCGGCCTCGAGTAACAGCAGTGGCTCCCTGTCCCCCTCCGCTTCCTCTGACTGCCTGGTGGCGCGGGGAGGGCCGGGCCGCAGTCACGTGGCAGCTCTGCGATCGCGCTTTGAGCTGGAGTATGCCCTCAATGCCAGGGCCTACGCTGTCTGGTCACAGAGCACGGGGCGACGTTCTTCCCAAGGCCTTTCCCTGGATGAACTGAGGAAGAATCTGCAGTACCCCCCCATTGACAGGAACGGCTACGTCTCTGATCCCATGAGCACCATGCGCTTTCactcctgcagcagcaatgGCAGCTTTGAAGACAGCAACTGACTTCGGGGTAATCGGCTCCCAGACAGCTCATTAAGATGCACCACAGCACCGCCTGACAGCTTCCCAGCACAATTCTAGTGATGAAGGTTTGAGATAGTATGATAAGTGAAGGCATAGACCACTGTCTAGTATTTAATCACAGCGGGCGGCTAACCTAAAAACATGCACGCAAGTGAGTGAAAtgataatttgtattaaagtaTACTTACTATATGCTGCTTAAGAGTAGTCGGtgaagtattttttattcatacTGTGTTAATGGAATATTTCATAGTTTTAGAACTAAATGAAAAACTTGGCGcttatagtatttatttttagtttatttgcttaattatttgGACATTTGTAAGACTGTggcatacacatacattttcatgctGATTTTGAGGttcactttttttaatgcaatatgtTCTGAAAGATAAAAGGTTTTTAAACATCTATCACAGGTGACTTGCCTTTCCTATTGACTTTCTACTGGACAGACCATAGTGAATACTGAAGGGGTTTTTCAATAATGCTAATTCTGCCAGCTGAGTGCTGGTGGGcaggtcattttaatttaaactaaaagtcaaataaaaaaagaatcaaatgtttccatttattatttttattacacacaaaattaaataatatataatcatacAATCTTTTTGCAGTAcagtgcattatttaaaaaaaagaaagcaatcacacacaaataaagacaatgaGCACTTTCTGTACTTCCTGAGTACACTGTCAATATGAAGCTTAGGTTTCAGTTGCACAACTTGGTCAATTTGGATTGACTATTTTGACTTCCTTACTAATGTGAACCAGAGCAGCAGCAAAACGTCCAGGTATTTAGAAAGACACAACCTTTACGATATACACAAGGAACAGCAAGCCTTTACAACTTCCAAACCAGGGATGTACTTTGCAATCTTCAAAGAAAACCGCTTCAGTGATttgcaaaaataacaatttcccattatgcttaaaaaaagtatacagCAAGCAATTATGTATGAATACATTGGCAACTTCAATAAAGATAActtcacaaatacaaatgaataatgCAACTACATAACATTGCCAATAAGGAATTatgttaagaaatataataaaatgaaatgtctaTACAAGCAATGttgcaaaaatgtatatgatgaTTAATATAGTATATTATGTATTGTCCCATACCTGTGATCATTCGTAATCTTCTAGGACAAGAAAATATTTGCCTTACAAACAAACTAAAGTATTAAcccatattaaaaatgataattaaaaaatgctgttcGTATGAGTTTACTATTTCTGTACCAATTCTACATCCGTATGACTATTCATTTATAGTTATATCAGTGTTGGGCAACCTTGTGAGgtaatattgttttgaaagttaatACACAAACAAGTTTGTTTggtaaagaaacatttttcgATGAGTCCAAAACTTCCTTTCAAACagacatataaaaataaatagatttaaatctCTCattaaatagtaaaaataaagcatCTACATCAAGGTATCcagggtattttatttttccttcttctccacAAATAAAGTACTTTCCAGTGCAATTATGGAGGACCTATATTCAATAGAATTTTGAATTTGgtcatttaagtattttaaaatatgatagaGTAGGCCACGCAGAGGAATATCTGCTTTCAAGGATCTCACGAAAGGCTTATTCTACAGAAGACTCTCAAAATACCACAGGGCCTCCTTCGGTGTCAATCAGTAATCTTCTACATCATGGCAAAAGGTGAAGAGAAATATTTTATGGTGAGTTATACAATACAACTTCCTTCCAGCTATCACTGAAATATGCTAACAACCCAAAACAGACAACAGAAAAGAAATACTGATGTACATTTAACAGTTGAATGACTAATACCTCAAACGAGTgaataaatgttgtaaatgtatattatataaagcCTTTTTCTTACAACAAATTTTATGGCTGGAATCTATGGAAGCATATTAGcaccacagaaaaaataatctatagaCACTTAAACGGTTGTGTAGAGTTGAAATATGAGtatttgcaaaataatgtactCAGTCTTAAATCTGAGCACCTGGAATCCTCCCTTGTTCTTTTGAGACTGAATAGGTGTTCAAaattattatactgtactgtactgtatactgtaGTTTATTATTAAACTGACACAATACTATTTGCTATTTACGATGTGGGCATGTGTAACactaattattttcaaatactgcAATATTATCTGGTTAAAGCAATATTATGTCATATTAACACTATTTATTTCCTCTGTGGCACTAATAAGTTTCTGTAGGATATCTCCTAATATGTGTAATGTgccaaaaaagtaattttaccAAGTTTTAAAGTCACACTCAGCTCTGCTAGCATATTTTATACAATCAGATAATTCTAAATGCAAAATTCGGTACAGTAGCTGAAAGTTTAACACAAgctatatcaatattaatatcagGTACAGCATTACTCTCATTTTATAcagattaaaatgatatataaaagATGAGCAAGACCTAgatgtattttactttcattgtgttatttatgCAGTGTTGCAAACTGAGGAATGTGCTTCTTATCCAACTGACATTCATGAAATGCACTTCTTCAGTATCCTGTGTCTGCGGGTGGGTGTTTGGGATTTTACTTAAGTGGTTTGGGGATTTCCTTGGTCTGCGGAAAGTACTTCTACCGGTGTCTCCTCGTCCTTATTGGCCTCGGGCTCATCTTTCGTGTGTGATGTTGCATTAATAAACTGCTCTTCTGTGTTACTCTGCAACTGTACTTTCCCGTTCCCACACTTGTACACTTGACTCTCAGATGTAGATTCAGCTTTCTTGTCTGACTCCAAGCCTGTCTCCTCCAGCTTTACTTCAGTCTTCTTGGTTGTAAGGGCATTAGACTCTTCTTCATTTACTCCAGCCTCCACAGCTGGTGCACTTTCTGGGGATTTTGAAGGCTGTTCTTCTCCAGTCTGAGATCTAACCTCCTGTGTGCTACTGTCAGGCAATCCTGCTATAGACACAGTCTCCGTCTCATCATCTTCCCCCTTGGGCTCCGTATTTTCTCCTTCATCTGAACCATGCTCTTGTTCTAGTTTACTCAGAGACTCTGTGGTGCCTTGAAGCTGTGCTTGTTCTTCATCAGCCTCAGGATCTAACTCTTCTTCTTTAGACAGAGTCACTGATGCCGGGTCTTCTGTGCCAGTGGTGGACTCGTCTCTCTCTGATCTAACCTGGGAATGTGTGCTTTCATTATCAGAGTCAGTTGGGTTCATTTTTACTTCACTCACTGGCTCTGACTGATGTTCCTCCCCTGCCACCCCCTGAGCCCCAGACTCTGCAGCAGCCTCTTCTGTGTGAACGGTGTCTTTTGTCTCCAACACTTCCGCAGTATCTTCAGCCGCTCCGCCagtgtcctctctctcccctgggAGAGCTTCCTCTTGTTCTTCAGATTCCTTCTCTGGTTGGTCCTCCAGTTCAGCCTCACTGGTCTCAGTTGTGCTCCCTGCCTCAGCAGCTGTACcttctgcttctttttcttGTCCTCCATCTGGCTTCT

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0006508 proteolysis biological_process
GO:0004190 aspartic-type endopeptidase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0004672 protein kinase activity molecular_function

KEGG:

id description
K17535 TNNI3K; serine/threonine-protein kinase TNNI3K

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU181947 lncRNA downstream 280501 11571190 ~ 11572410 (-) True G144672
TU181934 lncRNA downstream 346909 11505678 ~ 11506002 (-) True G144659
TU181932 lncRNA downstream 351836 11499172 ~ 11501075 (-) True G144657
TU181875 lncRNA downstream 524430 11322583 ~ 11328481 (-) True G144614
TU182132 lncRNA upstream 130663 12009918 ~ 12010371 (-) True G144821
TU182139 lncRNA upstream 144259 12023514 ~ 12029449 (-) True G144826
TU182205 lncRNA upstream 423324 12302579 ~ 12302836 (-) True G144877
TU182206 lncRNA upstream 423710 12302965 ~ 12303263 (-) True G144878
TU182207 lncRNA upstream 424156 12303411 ~ 12303620 (-) True G144879
AMCG00004995 mRNA downstream 17377 11832449 ~ 11835534 (-) True AMCG00004995
AMCG00004996 mRNA downstream 56235 11787635 ~ 11796676 (-) True AMCG00004996
AMCG00005000 mRNA downstream 171445 11669420 ~ 11681466 (-) True AMCG00005000
AMCG00005003 mRNA downstream 233636 11603594 ~ 11619275 (-) True AMCG00005003
AMCG00004994 mRNA downstream 272725 11577070 ~ 11580186 (-) True AMCG00004994
AMCG00005002 mRNA upstream 600 11879855 ~ 11882707 (-) True AMCG00005002
AMCG00004980 mRNA upstream 18925 11898180 ~ 11914425 (-) True AMCG00004980
AMCG00004988 mRNA upstream 101913 11981168 ~ 11984864 (-) True AMCG00004988
AMCG00004990 mRNA upstream 111395 11990650 ~ 11993097 (-) True AMCG00004990
AMCG00004989 mRNA upstream 121856 12001111 ~ 12003204 (-) True AMCG00004989
TU181238 other downstream 2946317 8872885 ~ 8906594 (-) True G144115
TU181227 other downstream 3011923 8836360 ~ 8840988 (-) False AMCG00004894
TU181155 other downstream 3475910 8353989 ~ 8377001 (-) True G144050
TU180667 other downstream 6069727 5736809 ~ 5783184 (-) True G143659
TU180357 other downstream 7736497 4113747 ~ 4116414 (-) False AMCG00004819
TU182156 other upstream 274870 12154125 ~ 12156378 (-) False AMCG00005011
TU182157 other upstream 274870 12154125 ~ 12156378 (-) True AMCG00005011
TU182413 other upstream 1456954 13336209 ~ 13336746 (-) True G145046
TU182803 other upstream 3085324 14964579 ~ 14967623 (-) False AMCG00005077
TU183873 other upstream 7135292 19014547 ~ 19015663 (-) False AMCG00005214

Expression Profile