RNA id: AMCG00005002


Basic Information

Item Value
RNA id AMCG00005002
length 2369
RNA type mRNA
GC content 0.44
exon number 4
gene id AMCG00005002
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 11879855 ~ 11882707 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCGAAACTATGGCGCATTCCCTTTTTAAAGATGGCGGCTTTGTGTCTCTGGGTTTGACGGTTCCCTTGCTCGGGGTCGGAGGTCAGCACAGGATCATTTTACAACACAATGAACGAACTGCAGAAGCGCTGGAAGCTGTCGTTGCAAAAGTCAACGAGACAAAAACTGGAAAAGTTTGACCGATTAAGAGGGAAGAGAGTGCAGGATGGGGAATTCTGGGATGTTGCCATCATCACCGCAGTGGATGAGACCCAGAAAGCTGCTTATGAGATGCAGATCACCGACAAGCTTCACCGAGGGGAGCTTCCTCTTGGCGTCCCTTTCCACGTGTTTGCGGACCCTCCTGGCCCCAAAATCGGTAATGGAGGGTCTACTCTGCATTCCTTAGAACAAGTCAAGGATATGTATGGAGAAAAATTAAGTGGATTCAGAATAATTATCATTCATGCAGGAGGTTTTAGTCAACGGCTACCTAGTGCAAGCGCTCTTGGGAAAATCTTTACAGCCCTGCCCCTGGGTGACCCACTGTACCAGATGTTGGAGCTGAAGCTGGCTATGTACATTGACTTTCCTTCACACATGAGGCCAGGAGTGCTGGTAACCTGCGCTGATGATATTGAGCTTTACGCCATTAAAGAGAATGTGGCCATCGTGTTCGACAGGCCCGGCTTCTCTGCGTTAGCCCACCCATCCCCTCTTTCCATCGGGAGGACTCATGGAGTGTTTGTTCTGGAACCCGCAGCCGAATCGGACCTTCCTGAACTGGAGTACAGGTCCTGTCATTGTTTCCTTCACAAACCCAGCGTCGACAAAATGCAGGCAAGCGGAGCAGTTTGTAGTGGGGTGTCATGTGCAGAATATAGCAGCAGCTGTGTGAGTGGCTCAGAATTTGTTTACACAGATAGCACATATTACATAGACTATCACACAGCCACACGTCTGCTTGCTTTACTCAAAGAAATTGGACCGCTAGATTGTGAAATAGATGCCTACGGTGATTTCTTGCAGGCCTTGGGTCCTGGGGCAACGCCAGCatatacaaaacacactgcTAATGTGacaaaggaggaaaaaaaccTGGTCAATGTTAGAGAACAGATATTCTCCCTTCTTAAAGGAACCCCACTTAATGTAGTGGTGCTAAATAACTCAAAATTCTATCATGTTGGCACTACCCAggaatatttgtttcatttgacAGGAGACCCAGACCTCAGGGCAGAACTTGGTCTACTTTCTGATGCTTTTAGTATCTGTCCAGGTGACACTTCAAAAGATTCTGCAGTTTGTGTTATTCACAGCCTTCTCCATCCTAGCTGTGCCGTGGCTTCAGGTTCAGTCATTGAGTACTCAAGGCTCGGCCCTAATGTTACTGTAGGTGGGAACACTATAATTAGTGGTTGCTGGATAGATGGTGGCCTCAGTGTCCCATCTAATGCTTTCATACATTCACTGACTGGGAGTCTTAACGGGGACACAGTGTTTGTCACTATTATGTTAGGAATAGAGGACAATGTGAAGAAAAGTGTGTCGTCTGTCTCTGACATTAGCCAGCTGCAGTTCTTTGGAACGAGTTTAGTGACGTGCCTAGGCTGCTGGGGTCTGTCTGTTGGAGACCTGAAGTTCTCAGGTGACCAATCCTGCCTGAGTTTGTGGAACGCAAGAGTCTTTCCTTTGTGCTCTGATCTACAGAGTTCATTCGCAACGTCCCTGCAGATGATTAACTCTTTGCACAGTGAATCCAGTTGCAGCCTTCTTCAggatttcaaattattttctttgcaggagGCTCTTAAATACAAAGACTTAGACAAAATGCTAAGATTCAGGAAGGGTCTTTTTGAAGACATATGTAAGGAGAAATCGAAGGCTAACTGAAAGTGTCTGGCCTTTTTCCAAATAATGTTGCAGGGATACGCTTGGTGGGTGAGAGGGTTGTCTTAAGGGAGCAGACTTAGATCTGTTGGTGTCCAGGGGTACATAATAATGTCTTTCCACAATATGCAATATTTGAACAATCAGAATGATGTgcttaatttttaaatacaaaaaccaAAACCTTCCTctttgtatggttttatttgtgaaaagaACACATGCATTTGCCATTATACATTTAAGTtgcataattcacattttaaacagaggAGGGTAATCTGTCCTGATATCCCATGATGccaagtgtgtgtttttattttgtaccattACTTTCTTAGCAGATTGTGGTCAAAATATAAGATCATAAAAACTATGTAAAcgtgtaaataatattaaaaaagtatatttttctttcaactgCTTTTGTGGCTTGTAATTAATCATCCTGTCCAGGTGTGGAGTTTTCCAAGTAATAAAAGGCAGCTGTGCTG

Function

GO: NA

KEGG:

id description
K00976 FPGT; fucose-1-phosphate guanylyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU181947 lncRNA downstream 307445 11571190 ~ 11572410 (-) True G144672
TU181934 lncRNA downstream 373853 11505678 ~ 11506002 (-) True G144659
TU181932 lncRNA downstream 378780 11499172 ~ 11501075 (-) True G144657
TU181875 lncRNA downstream 551374 11322583 ~ 11328481 (-) True G144614
TU182132 lncRNA upstream 127211 12009918 ~ 12010371 (-) True G144821
TU182139 lncRNA upstream 140807 12023514 ~ 12029449 (-) True G144826
TU182205 lncRNA upstream 419872 12302579 ~ 12302836 (-) True G144877
TU182206 lncRNA upstream 420258 12302965 ~ 12303263 (-) True G144878
TU182207 lncRNA upstream 420704 12303411 ~ 12303620 (-) True G144879
AMCG00005001 mRNA downstream 600 11852911 ~ 11879255 (-) True AMCG00005001
AMCG00004995 mRNA downstream 44321 11832449 ~ 11835534 (-) True AMCG00004995
AMCG00004996 mRNA downstream 83179 11787635 ~ 11796676 (-) True AMCG00004996
AMCG00005000 mRNA downstream 198389 11669420 ~ 11681466 (-) True AMCG00005000
AMCG00005003 mRNA downstream 260580 11603594 ~ 11619275 (-) True AMCG00005003
AMCG00004980 mRNA upstream 15473 11898180 ~ 11914425 (-) True AMCG00004980
AMCG00004988 mRNA upstream 98461 11981168 ~ 11984864 (-) True AMCG00004988
AMCG00004990 mRNA upstream 107943 11990650 ~ 11993097 (-) True AMCG00004990
AMCG00004989 mRNA upstream 118404 12001111 ~ 12003204 (-) True AMCG00004989
AMCG00004987 mRNA upstream 128646 12011353 ~ 12019759 (-) True AMCG00004987
TU181238 other downstream 2973261 8872885 ~ 8906594 (-) True G144115
TU181227 other downstream 3038867 8836360 ~ 8840988 (-) False AMCG00004894
TU181155 other downstream 3502854 8353989 ~ 8377001 (-) True G144050
TU180667 other downstream 6096671 5736809 ~ 5783184 (-) True G143659
TU180357 other downstream 7763441 4113747 ~ 4116414 (-) False AMCG00004819
TU182156 other upstream 271418 12154125 ~ 12156378 (-) False AMCG00005011
TU182157 other upstream 271418 12154125 ~ 12156378 (-) True AMCG00005011
TU182413 other upstream 1453502 13336209 ~ 13336746 (-) True G145046
TU182803 other upstream 3081872 14964579 ~ 14967623 (-) False AMCG00005077
TU183873 other upstream 7131840 19014547 ~ 19015663 (-) False AMCG00005214

Expression Profile