RNA id: AMCG00005003


Basic Information

Item Value
RNA id AMCG00005003
length 654
RNA type mRNA
GC content 0.54
exon number 3
gene id AMCG00005003
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 11603594 ~ 11619275 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGTTTGATAGTGGCCGTGTCTCTGTTCGTTGTGGTGGTCAATTACACGGAGAAGCCCTACATCTTACTGCAGCCAGTCTTTGGACAGACTTTCAGCAACCGATGGGTCTTTTCTCGTCTGCAGCACAAGAACTTGAAACCACACCTGGGTTACGTCAGCGTCCCAAAACAAGAGCCTCTCAAGCTTAACTGCGACGTGTGCAGTGTGGTGTCCAGCTCGGGCCAGATGTTGGACCGGGAGGCGGGCTGGGAGATTGACCAGTCGTCCTGCGTGTTGAGGATGAACAATGCGCCCACCAAGGGCTTCGAGACGGACGTGGGCAGGAGGACCACGCTCAGGGTGGTCTCCCACACCAGCGTACCTCTCCTCTTGCAGAAGCAGCAGTACTTCTTCGGGCAGGCCAACGACACCGTGTATGTCATCTGGGGTCCTCTGCGCAACATGAGGAAAGACGGCAAAGGCATTGTGTACAACATGCTGAGGCAGGTGATGGACAACTATCCCCAGGCCAAGATCTTTGTGACCACGGAGGAGAGAATGAACTACTGTGACAAGGTGTTCAAAGAGGAGACCGGGAAAGATAGGACCAAAGCTCTGCATTCTCCCAAAAACGATCTCTGCTTGTTCCCCTGTGTGCCCTCCCTGCTGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU181947 lncRNA downstream 31184 11571190 ~ 11572410 (-) True G144672
TU181934 lncRNA downstream 97592 11505678 ~ 11506002 (-) True G144659
TU181932 lncRNA downstream 102519 11499172 ~ 11501075 (-) True G144657
TU181875 lncRNA downstream 275113 11322583 ~ 11328481 (-) True G144614
TU182132 lncRNA upstream 390643 12009918 ~ 12010371 (-) True G144821
TU182139 lncRNA upstream 404239 12023514 ~ 12029449 (-) True G144826
TU182205 lncRNA upstream 683304 12302579 ~ 12302836 (-) True G144877
TU182206 lncRNA upstream 683690 12302965 ~ 12303263 (-) True G144878
TU182207 lncRNA upstream 684136 12303411 ~ 12303620 (-) True G144879
AMCG00004994 mRNA downstream 23408 11577070 ~ 11580186 (-) True AMCG00004994
AMCG00004998 mRNA downstream 78405 11510220 ~ 11525189 (-) True AMCG00004998
AMCG00004999 mRNA downstream 141092 11451742 ~ 11462502 (-) True AMCG00004999
AMCG00004997 mRNA downstream 165412 11412899 ~ 11438182 (-) True AMCG00004997
AMCG00004972 mRNA downstream 242041 11343332 ~ 11361553 (-) True AMCG00004972
AMCG00005000 mRNA upstream 50145 11669420 ~ 11681466 (-) True AMCG00005000
AMCG00004996 mRNA upstream 168360 11787635 ~ 11796676 (-) True AMCG00004996
AMCG00004995 mRNA upstream 213174 11832449 ~ 11835534 (-) True AMCG00004995
AMCG00005001 mRNA upstream 233636 11852911 ~ 11879255 (-) True AMCG00005001
AMCG00005002 mRNA upstream 260580 11879855 ~ 11882707 (-) True AMCG00005002
TU181238 other downstream 2697000 8872885 ~ 8906594 (-) True G144115
TU181227 other downstream 2762606 8836360 ~ 8840988 (-) False AMCG00004894
TU181155 other downstream 3226593 8353989 ~ 8377001 (-) True G144050
TU180667 other downstream 5820410 5736809 ~ 5783184 (-) True G143659
TU180357 other downstream 7487180 4113747 ~ 4116414 (-) False AMCG00004819
TU182156 other upstream 534850 12154125 ~ 12156378 (-) False AMCG00005011
TU182157 other upstream 534850 12154125 ~ 12156378 (-) True AMCG00005011
TU182413 other upstream 1716934 13336209 ~ 13336746 (-) True G145046
TU182803 other upstream 3345304 14964579 ~ 14967623 (-) False AMCG00005077
TU183873 other upstream 7395272 19014547 ~ 19015663 (-) False AMCG00005214

Expression Profile