RNA id: AMCG00005005


Basic Information

Item Value
RNA id AMCG00005005
length 573
RNA type mRNA
GC content 0.57
exon number 4
gene id AMCG00005005
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 12101060 ~ 12112928 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTGAAGGCTGCAACAAGGCTTTTTCACGGCTCGAGAACCTCAAGATCCACCTGCGCAGTCACACAGGagaaaagccatacctctgccAGCACCCGGGCTGCCAGAAAGCTTTCAGCAACTCCAGTGACCGGGCAAAGCACCAGCGCACACACCTGGACACTAAACCATATGCGTGTCAGATCCCTGGCTGCACCAAACGCTACACAGACCCCAGCTCTCTCCGCAAGCATGTGAAAGCCCATTCTGCCAAAGAGCAACAGGTGCGTAAGAAGTTGCGTCCCTGTACCCATCTGGACCAAGACGTGCTCAGCGAGTGCCTGGCAGTGCAGCACCTCCACAGCTCCACCACCTCTCAGCACCTCCTCAATGGCAAGTGTGCCAGGTCACCTGTGATGGGCCAGGATATGTTCACAGGCATGTACACTGGCTCCAGTGCCCCCCAAAATGGATCCACATCTGGGCTTCTTCCACCCACTCATGACATGTCCTCGAGGCAGTCGGCTCTGGAGGGGAGCATCAGCAGCCCACACAATCATCTGTCACCTCTGCCTGCTGTGGAGAACACCAGAGAA

Function

GO: NA

KEGG:

id description
K09232 GLIS1_3; zinc finger protein GLIS1/3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU181959 lncRNA upstream 424155 11674239 ~ 11676905 (+) True G144683
TU181958 lncRNA upstream 424155 11675924 ~ 11676905 (+) False G144683
TU181957 lncRNA upstream 427545 11672872 ~ 11673515 (+) True G144682
TU181956 lncRNA upstream 428575 11671555 ~ 11672485 (+) True G144681
TU181955 lncRNA upstream 429618 11669475 ~ 11671442 (+) True G144680
TU182111 lncRNA downstream 81198 12194126 ~ 12194338 (+) True G144804
TU182112 lncRNA downstream 83344 12196272 ~ 12196773 (+) True G144805
TU182118 lncRNA downstream 126563 12239491 ~ 12242198 (+) True G144809
TU182120 lncRNA downstream 143360 12256288 ~ 12257869 (+) True G144811
TU182246 lncRNA downstream 503710 12616638 ~ 12616932 (+) True G144908
AMCG00005008 mRNA upstream 17559 12066384 ~ 12083501 (+) True AMCG00005008
AMCG00004983 mRNA upstream 63678 12029197 ~ 12037382 (+) True AMCG00004983
AMCG00004981 mRNA upstream 76861 12020156 ~ 12024199 (+) True AMCG00004981
AMCG00004985 mRNA upstream 83655 12015575 ~ 12017405 (+) True AMCG00004985
AMCG00004982 mRNA upstream 90866 12008911 ~ 12010194 (+) True AMCG00004982
AMCG00005007 mRNA downstream 37560 12150488 ~ 12155810 (+) True AMCG00005007
AMCG00005006 mRNA downstream 59239 12172167 ~ 12178452 (+) True AMCG00005006
AMCG00005014 mRNA downstream 188413 12301341 ~ 12307027 (+) True AMCG00005014
AMCG00005016 mRNA downstream 232598 12345526 ~ 12346830 (+) True AMCG00005016
AMCG00005015 mRNA downstream 235616 12348544 ~ 12368396 (+) True AMCG00005015
TU181952 other upstream 437692 11662681 ~ 11663368 (+) True G144677
TU180912 other upstream 4370060 7729389 ~ 7731000 (+) False AMCG00004870
TU180621 other upstream 6676939 5423703 ~ 5424121 (+) True G143626
TU180426 other upstream 7728971 4371709 ~ 4372089 (+) True G143471
TU180351 other upstream 7991405 4109022 ~ 4109655 (+) True G143404
TU182286 other downstream 667652 12780580 ~ 12781170 (+) True G144940
TU183002 other downstream 3271315 15384243 ~ 15384612 (+) False AMCG00005105
TU183561 other downstream 5652329 17765257 ~ 17771525 (+) True G145932
TU184056 other downstream 7466645 19579573 ~ 19579807 (+) True G146305
TU184341 other downstream 8069426 20182354 ~ 20184643 (+) True G146519

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00069728 True 676 mRNA 0.57 3 NC_007119.7 18101608 ~ 18150919 (+)
grasscarp (Ctenopharyngodon idella) CI01000010_03787388_03880750.mRNA True 2709 mRNA 0.56 11 CI01000010 3787388 ~ 3880750 (-)