RNA id: AMCG00005006


Basic Information

Item Value
RNA id AMCG00005006
length 2172
RNA type mRNA
GC content 0.50
exon number 9
gene id AMCG00005006
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 12172167 ~ 12178452 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGAACGTTTCCGGGTTTGTCATGTGACGAAACAAAGATGGCCGCGCCCAGGCACTTGCAAGGGGCGTGACTGACTGATTACTGAATTCCAGTTTTAAGACTCGGGAGGAGACCACTTAAGAAGTCCGCCGGTTTAGTTACGGTCAGGTGTGTGACGTTGCTGAGACCATCATCGTACTGCTGGGACACTACTGACTTCACCATGGACAAGGACAATCACATTCTCCCAAAGGACTTCCCAGAGCTGCAGAATGACTGTTTCCTGCGCGCAGCACGGGGCGAGGAGACCACGTGTGTCCCAGTGTGGTGTATGAGGCAAGCTGGCCGCTACCTTCCAGAGTTCCGGGAGTCCAGAGCAGGCAAGGACTTCTTCGAGACGTGCCGCTCCCCCGAGGCCTGCTGTGAGCTCACACTACAGCCCTTAAGACGTTTCCCATTTGATGCAGCAATCATCTTCTCCGATATCTTGGTGGTTCCTCAGGCTCTGGGTATGGATGTGCAGATGGTTCCTGGGAAAGGCCCCACGTTCCCAGAGCCCCTGAAGGAACCGGAGGACCTCCTCCGTCTGCGGACCACAGTGGACGTGTCAGCAGAGCTGGGCTACGTCTTCAAGGCCATCACGTTGACCCGCCACAAGCTGGAGGGCAAGGTCCCCCTCATCGGCTTCACTGGAGCACCGTGGACACTGATGACCTACATGATCGAGGGTGGAGGCTCCAACACCATGTCCAAGGCCAAGCGCTGGCTGTATCGCCACCCGGAGGCCAGCCACCGCCTGCTGGTGCAGCTCACGGACGTCATCGTGGAGTACCTGCTGGGACAGGTGGCAGCGGGGGCACAGgcTCTGCAGGTGTTCGAGTCCCACGCTGGCTGCCTCGGTCCGGCGCAGTTTAACGAGTTTGCCCTGCCTTACCTGCGGACGATCGCTCGGAAAGTGAAGGAGAAGCTGAAGGAAGCGGGGCTGGATGACGTGCCCATGATTGTGTTTGCAAAGGATGGGCACTACGCCCTGGAGGACCTCTCTCAGTCTCAGTATGAAGTGGAGAAGATTGGTGAGATGGTGAAGATGATGCTGGAAGGCTTTGGCACCCAGCGGTACATCGCTAACCTGGGGCATGGGCTGTACCCCGACATGGACCCAGAGCACGTGGGCGCCTTCGTGGAAGCTGTCCACTCGCACTCGCGGCAGCTCTGCCAGCTCAAATAGCCAAACCACCAGCCATTGCTACGGCACAGGAAATGTAATGCTTCAAAACAAATCCGATCTAACTTTGCTTTTGCACAGTGAAATCTTGATGCAGAAGATTGTGCTGGCAGCGCTTTGGACATTACACTGAAACTACATGCTGTTACATTAGAGCTACAGGTGAATTGAATTGCTCatgagaaacaaatatattaatagcATTAAagatctatatacatatacacacagacattgtTTTATATCATAGTTAATAAAGACTACTGTTGTTTTGGATTGGACTCGTTCACTGGCAGTATAACAGTTGGTTGTAGCTAAATCATTACCCTATACCTTTAGTTACTTAGCAGGCACTATTTTTTGCAGGTTCCTTTATTTGTAAACCTGAGGACTATAAAGATGGTATAGGGAAAAGCAGTTAGATTAAGAACTTATGATTATTTGGGGCATCATGGTAGGTGATGACAAAATCAAACTGGTATGGGGAATGCAACCTTCAGAGCAGTCTAACACTGGATCATCTTTTCAGTATTAAATCACTGCTGCTCCAGCCTTCTGGAATATCTGTAATACTCTTCTTAAACTGATTGCATTTATATGaatgttaaaaacaatgttctaGGTTGTTTACTTGTACAGACAGGCCTTACCTAGTTGAAATACGTGATGATTTCCATAGGCCGGTGCCATACCATGATCGAAAATAGCCACATTTGCACTGAGAGAACGAAAGCGTGAATCTGTATATTCAAATCTGCCCTGTTTTTGTTACTGGATCAATGGTGACCTGCAAGGACCAGGATGCATCATCACACCAGGCAAAAGTGATCCTAGCCAGCTCTCCATGCAGCTCATCTGTCACAACCTGTATGGGAGTAATGAGATCGAGCTTTACCTGCACTAATGgtgggttgtttttgtttgtttttgtgttgcacCAGCAACACACTCTGGATTGGCTCAGACACC

Function

GO:

id name namespace
GO:0006782 protoporphyrinogen IX biosynthetic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0004853 uroporphyrinogen decarboxylase activity molecular_function

KEGG:

id description
K01599 hemE, UROD; uroporphyrinogen decarboxylase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU181959 lncRNA upstream 495262 11674239 ~ 11676905 (+) True G144683
TU181958 lncRNA upstream 495262 11675924 ~ 11676905 (+) False G144683
TU181957 lncRNA upstream 498652 11672872 ~ 11673515 (+) True G144682
TU181956 lncRNA upstream 499682 11671555 ~ 11672485 (+) True G144681
TU181955 lncRNA upstream 500725 11669475 ~ 11671442 (+) True G144680
TU182111 lncRNA downstream 15674 12194126 ~ 12194338 (+) True G144804
TU182112 lncRNA downstream 17820 12196272 ~ 12196773 (+) True G144805
TU182118 lncRNA downstream 61039 12239491 ~ 12242198 (+) True G144809
TU182120 lncRNA downstream 77836 12256288 ~ 12257869 (+) True G144811
TU182246 lncRNA downstream 438186 12616638 ~ 12616932 (+) True G144908
AMCG00005007 mRNA upstream 16357 12150488 ~ 12155810 (+) True AMCG00005007
AMCG00005005 mRNA upstream 59239 12101060 ~ 12112928 (+) True AMCG00005005
AMCG00005008 mRNA upstream 88666 12066384 ~ 12083501 (+) True AMCG00005008
AMCG00004983 mRNA upstream 134785 12029197 ~ 12037382 (+) True AMCG00004983
AMCG00004981 mRNA upstream 147968 12020156 ~ 12024199 (+) True AMCG00004981
AMCG00005014 mRNA downstream 122889 12301341 ~ 12307027 (+) True AMCG00005014
AMCG00005016 mRNA downstream 167074 12345526 ~ 12346830 (+) True AMCG00005016
AMCG00005015 mRNA downstream 170092 12348544 ~ 12368396 (+) True AMCG00005015
AMCG00005013 mRNA downstream 295099 12473551 ~ 12480425 (+) True AMCG00005013
AMCG00005023 mRNA downstream 395801 12574253 ~ 12607617 (+) True AMCG00005023
TU181952 other upstream 508799 11662681 ~ 11663368 (+) True G144677
TU180912 other upstream 4441167 7729389 ~ 7731000 (+) False AMCG00004870
TU180621 other upstream 6748046 5423703 ~ 5424121 (+) True G143626
TU180426 other upstream 7800078 4371709 ~ 4372089 (+) True G143471
TU180351 other upstream 8062512 4109022 ~ 4109655 (+) True G143404
TU182286 other downstream 602128 12780580 ~ 12781170 (+) True G144940
TU183002 other downstream 3205791 15384243 ~ 15384612 (+) False AMCG00005105
TU183561 other downstream 5586805 17765257 ~ 17771525 (+) True G145932
TU184056 other downstream 7401121 19579573 ~ 19579807 (+) True G146305
TU184341 other downstream 8003902 20182354 ~ 20184643 (+) True G146519

Expression Profile