RNA id: AMCG00005007


Basic Information

Item Value
RNA id AMCG00005007
length 2988
RNA type mRNA
GC content 0.48
exon number 10
gene id AMCG00005007
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 12150488 ~ 12155810 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ggaggaTACCAGGAATCTCTCaggtagtagtaataataacaatctcatacaaaaaaatatatatatagctaagCATAATtctaattaattcattattacaCAAAAATGATACTCTGACTAATGAAAGATTTCCTAGGGAAAGGGGTTTTTCTTCATCACAGAAGCCTTCCTGTGGATTTACCTACTGTGGACTCCACTGCTCTTCGCAATGACCATCTCTTACACCCTGGAAGTGGCCAATGCCCGCTTCGCTGGCTTCTCAAAGCTGCTCTTCAGGTGGAAAGGGAGCATCTATAAACTGCTCTACAAGGAGTTCATTGTCTATGCTGTCCTATACACGATCCTGAGCCTCACTTACAGGCGTTTGCTGAATGAAAATCAGAAGATAATGTTTGAAAAAGTTGCCATTTACTGCAAGGGTCAAGCCGATCTCATCCCCCTGTCCTTCGTACTGGGGTTCTACGTCACCCTGGTGGTGAACCGCTGGTGGAATCAGTACACCAGCATCCCCCTGCCAGACCAGCTCATGATGGTGGTGTCTGCCAACGTGCACGGCATGGACGAGAAGGGCCGCATCGTCCGGCGCACCCTGATGCGCTACGCCAACCTGTCCTCCGTGCTCATCCTGCGCTCCGTGAGCACCCGCGTCCGCAAGCGCTTCCCCACCATGGAGCACGTCGTGGAAGCAGGATTCATGACATCGGGCGAGTTGAAAAAGCTGGAGGGGATCCACTCGGACTTCAATAAGTACTGGATGCCCATGGTGTGGTTCACCAACCTGGCGTCACAGGCGCGCAGGGAGGGGCGCGTAAGGGACGATGTGGCGCTCAGACTGCTAATGGACGAGCTGAATAAGTACAGAGCCAAGTGCAGCATGCTGTTCCATTATGACTGGATCAGTATCCCTCTGGTTTACACGCAGGTCGTCACGATTGCCGTCTACTCTTTCTTCACAGTGTCTCTGATTGCTCGGCAGTATCTTAGTAATGCAAATGAACTGGACCTGTACGTCCCGGTCTTCACTTTGCTGCAGTTCTTCTTCTATGTTGGCTGGCTGAAGGTAGCAGAACAGATTATCAATCCATTTGGAGAGGATGACGACGACTTTGAGACAAATAAACTGATTGACAGAAACATTCAGGTGTCCCTGCTGGCTGTGGACGACATGTATCAGAACCTGCCTCTCGCTGAAAAGGACAAGTACTGGAACGAGGCCTCTACTGCCATCCCCTACACCCTGGCCACCGTCGCCGAGACTCTGAAACCCTCCTTCCTTGGCTCGACCTTTGACATGAGGATGAGCGAGGACCCAGCCCAGCACCAGACGGTGGAGCCGAGCCCCAAAACCCCACGTATGCAGACGCCCATGGTGACCCGCTTCCTGGCCGCCGCCGCCTCGCCCGCCATCAGCCTCAAGAACTTCGGCCGAGGCAACCGGGGCCTGCAGATGCTGCGGCTGCGCGGAGACAGTGTGAACTCCAACCCCTGGCAGGGCGAGGAGTGGGACTGCTCCAAACGCATCAACGAGGAGGAGAGCGAGGACGAGGACGATAAGGGCAGCCAGCAGTCCACGCCCCGCCGAGCCAACACGCGCCGGCTGGAGGCCTCCGAGCAgcagaagagaagagaggagacGGCGAAGATCACCATCACTGTTGACCCACCCCCCTCTGAGCATGAAAGCACGGACAGCTGACCGGGGCAACAGCAGGCTACTGTGGGGTTTCAGAGTCCAGCATCCCTCACAATGAACACACCCACACTATCCACCTCTGCACCACCCCTTCTAGGTTAATGTTAGGCAACattccctcccctcctccttcacccacaaagatttgCAGAGTCTTTCCTGAAGCCATGCTGTACTGCTTTTTGCCTTACGTGCTGTGAAAAGGGTTTTCTGAAAATTaaacaggggggggggggtttggagTGCAGGACAAAACACCTGGGAAGCAACGGTCAGTACATCATTGACTCGACTCAATCATTATATGTCGCTTAGTGTCTTTTGCTTGAGGTGATGGAGTTCTTTAGAACACAAAGGATCTTGTAATGCCTAATACTAATGGTTTCACTTCAAAGTCCTTTCAGATATTCACATTCCCAGCAGACCGTACCGATGCCCAACTGACCCAATTGTAACTCCCCAAAGTTAAGTATAACACAAACAGCagtaagtttaaaatgtaattttaatgggtgtattaaaatatacagtcaATGAACTCTGGTTTTGCCTTTACCTCAATGGTACCGAGTGTGTCCTCCAtctgaaacaaatacacattgttAGGATGGATGTCCACATCAAGGGGCTGAGAAAGGCAGGCTAGTTCCGAACTCTAATTGAGAATGCAATAATTATATAGTCTATTTAAAGGCTCCAGATATCCTTTCACCACTGGAACAATGATGTTTGTGCCATCTATTAGATACATTTCCCTACAATTCCTAATATTTAACAAGTTTAGAATCACCAATCCCCCTAACATAAGGTTAACATTTAAGTTTTGGTTTTCTGTTGATGCTTAAAAAGACAAGTCTTCCTCAGAGTCTCAAATGTCAGCACTTTACATTCAGTAGCAGAACTGGACAAAGATATCATCACTGTAAAGACTTTCTGCATTTATAGCATTAGAGCAGCATGCATGATGATCATTTATTCAAACTATAATTGTGGATTTGCCTTTACCTGGTGTTGCTCCGGATCTTTTCCTCATCAGGGTCTAGGCACGGCTTCAGTCTGGAGattcagattaaaataatgtttcaattaATTCTGGTGTGAAATGCTGTTTCAGTGAAAGTCTGATCGTGAAATACCAGGTCAACATCTGTAATATGCCGATGCTTTACACAGATTCAAGTCTTCCTCAGAGTCACTAATATCATCACTTTGCATTCAGTAGCAGAACTGGACAAAGATCTCATCAGTGAAAGACTTTGCATTTATAGCAGTCGAGCAGTTATGGTTAATTCCCC

Function

GO: NA

KEGG:

id description
K13881 BEST4, VMD2L2; bestrophin-4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU181959 lncRNA upstream 473583 11674239 ~ 11676905 (+) True G144683
TU181958 lncRNA upstream 473583 11675924 ~ 11676905 (+) False G144683
TU181957 lncRNA upstream 476973 11672872 ~ 11673515 (+) True G144682
TU181956 lncRNA upstream 478003 11671555 ~ 11672485 (+) True G144681
TU181955 lncRNA upstream 479046 11669475 ~ 11671442 (+) True G144680
TU182111 lncRNA downstream 38316 12194126 ~ 12194338 (+) True G144804
TU182112 lncRNA downstream 40462 12196272 ~ 12196773 (+) True G144805
TU182118 lncRNA downstream 83681 12239491 ~ 12242198 (+) True G144809
TU182120 lncRNA downstream 100478 12256288 ~ 12257869 (+) True G144811
TU182246 lncRNA downstream 460828 12616638 ~ 12616932 (+) True G144908
AMCG00005005 mRNA upstream 37560 12101060 ~ 12112928 (+) True AMCG00005005
AMCG00005008 mRNA upstream 66987 12066384 ~ 12083501 (+) True AMCG00005008
AMCG00004983 mRNA upstream 113106 12029197 ~ 12037382 (+) True AMCG00004983
AMCG00004981 mRNA upstream 126289 12020156 ~ 12024199 (+) True AMCG00004981
AMCG00004985 mRNA upstream 133083 12015575 ~ 12017405 (+) True AMCG00004985
AMCG00005006 mRNA downstream 16357 12172167 ~ 12178452 (+) True AMCG00005006
AMCG00005014 mRNA downstream 145531 12301341 ~ 12307027 (+) True AMCG00005014
AMCG00005016 mRNA downstream 189716 12345526 ~ 12346830 (+) True AMCG00005016
AMCG00005015 mRNA downstream 192734 12348544 ~ 12368396 (+) True AMCG00005015
AMCG00005013 mRNA downstream 317741 12473551 ~ 12480425 (+) True AMCG00005013
TU181952 other upstream 487120 11662681 ~ 11663368 (+) True G144677
TU180912 other upstream 4419488 7729389 ~ 7731000 (+) False AMCG00004870
TU180621 other upstream 6726367 5423703 ~ 5424121 (+) True G143626
TU180426 other upstream 7778399 4371709 ~ 4372089 (+) True G143471
TU180351 other upstream 8040833 4109022 ~ 4109655 (+) True G143404
TU182286 other downstream 624770 12780580 ~ 12781170 (+) True G144940
TU183002 other downstream 3228433 15384243 ~ 15384612 (+) False AMCG00005105
TU183561 other downstream 5609447 17765257 ~ 17771525 (+) True G145932
TU184056 other downstream 7423763 19579573 ~ 19579807 (+) True G146305
TU184341 other downstream 8026544 20182354 ~ 20184643 (+) True G146519

Expression Profile