RNA id: AMCG00005009


Basic Information

Item Value
RNA id AMCG00005009
length 3450
RNA type mRNA
GC content 0.53
exon number 21
gene id AMCG00005009
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 12163830 ~ 12172230 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCCCTTGCAAGTGCCTGGGCGCGGCCATCTTTGTTTCGTCACATGACAAACCCGGAAACGTTCCCTCCAGGCCCCTCCTTCGGTTTAGCTGTCTAACGATGTGCCTGAAGGACCCAACGTGAGTTGATTCAACAGGCCAACCGCCGGACCTGCCTTATTTATTGGAGTATGAGGACAACTTTAATTACTGTAAACACAGGTCACTCCGCCAACCTTTTTACTCCTTtttgtacagaaacaaaacacatgtgAACGTACATTACCGAACAAATCAAAGGACATGCGCACAACTAGGACGACACAAACTTTTGGAAAGCCCCCACGAAACGTAAACAGTATCCATATAGGCAttgaagctgtcattttatATCAGTAATTACGGCAAATAAACTGCGGACAGTTCGCACAAGGTACACCTTTGCTCTGCGGGACAGAAGCTCAACaaacagtttgtgtgtttatgtctgtGTCACCGGCTACTGGACCCAGGCCGAAGAGGGGGAAACCCAGCGGGGACGAGAAGACACCGGCCGATCGTCCACACACACCGGCATCGTAGCCCCGCAGACAGTGGGGGATGTTGTAGCGTGCAGACCGTGTATTGACATCGTTTTGTTTCCGACTGGACGTTGCATTAGCTGTCGAGGAAAGAGCAACAGACACTAAAACACGCACAAGGAAAGTCTGATGTCAGCGGCGGGAGTGTGGGGTGCGAGTCTGCGTTTTAATTACTATCACCGCTGAGAGATGTCACCCGGCGACAACCCCCACATCCTTCTGGGGAGAATTCGCTTTTTAATCGAGTGCATTGAGTGTTTTAGAAATAGCAAGCCGATCCCGGAGAGCCTGTGCTTCGTGCCCAAGGAAGTCTGCTACAAAATCTGCAAGGACTCGTCGTTCAGCTCCGGCGCCGCGTCGTGTGCGTCCAGTGGAAACTCGTCGGTGGGAAAGACCCTGGTCTCGGTGTGGGAGAGCCCGTCCCAGGCTCAACAGAGTAAGAAACTATGCAAGTTCAACATCGAGCCCAAGAAAGGGACGTGCATCAGGACTACGGGAGAGGAGTATTGCAACAACTACGGCCTGTGGGTCAAAATCAACAAGGAGCAGCTGGAGGAGCACAAGAACGGCCTGGATGTGGACGAGGGCTGGATCCTGGTGTGTAAGCACATGGACGGAGGGGACAGGCTGGTGCCGGTGGAGTCCGCCGAGACTGTCAGCAGGCAGCAGCAGCTCTTCGGATACGACTACAAAGCCTTTACCAGGTGGGAGCAGGTGGTGGATGCAGAGTACGGCCTACACCTGGGCTCCAGACCCAAGGTGACGGAGCGCGATGAGGCTGCTGTTCAGAAACTCAGACATGTGCCCCCCACCTGGACGTTTGAGTGCGACGAGGACTTGGTCCACTATTTCTACGACCACATCGGCAAGGAGGACGAGAACCTGGGCAGTGTGAAGCAGTGTGTGGAGAGCATCGACGTCTCGTCCTGCTCGGAAGACCCCAGCGGTGGTGCTGGGTGCCTGACCGACGGGGACACTGACACGTACTGGGAGAGCGACGGGATGCAGGGCCAGCACTGGATTCGCCTGCACATGAAGAAGGGCACTGTAGTTAAaaAGCTGATTTTAACAGTCGATTCGACAGATGACAACTACATGCCCAAGAGAATCACTGTGTTTGGGGGTGAAGGAGACAACCTGAAGAAAGTCAGTGATGTTAATATAGATGAGAATTTAATTGGGGAGGTGTGTGTTCTGGAAGACATGACATCACATTTGCCAGTAATTGAAATCCGAATAGTGGAGTGTAGAGATGAAGGGATCGATGTGCGAATCAGAGGGTTAAAGATCAAGTCCTCCCGGGAGCGGGACCTGGGCCTGAATGCAGACATGTTCCAGTCCCCTAACCTGGTGCGATACCCACGGCTGGAGGGCACACACCCTGACGTGCTGTACAGGAGAGCCATCGTCATCCAGAGGTTCATCTCCATGTTGGACAGTCTGCTCCCTCATCTGGTACCTTCATGGGATTACACCATGGGCACCTTCAACCATCTTAAAcACATCAAGCAGTTCCTACTGCTGTCCAAGCGCCGCTCGGCCCTCATCACACAGTGCCTGAAGGACTCGGAGACCAGTAAGCCCAACTTAATGCCCCGGCTGTACATCAACCGGCGCCTGGCCATGGAACACCGCGACAACCCCTCCCTGGACCCCAGCTGTAAGAACGCAGTCTTCACCCAGGTATATGAGGGCCTGAAACCTTCTGATAAGTATGAGAAGACCCTAGATtacagGTGGCCGGTGCGTTACGACCAGTGGTGGGAATGCAAATTCATCTCGGAGGGAATCATAGACCAAGgtGGTGGATTCAGAGACAGCCTGGCTGACATGTCGGAGGAGTTGTGCCCGAGTTCTGCAGAGTGTCCAGTGCCTTTACCCTTCTGCACAAGGACTTCCAACCAGggcACTGGGGAGGCCCGGGACTGCTACGTGCCCAACCCGTCCTGCCGGGAGTTTCACAAGTACGAGTGGATTGGCCAGCTGATGGGCGCTGCGCTCAGAGGGAAGGACTTTCTAGTGCTGGCTCTGCCAGGTATCGTGTGGAAGCAACTGATGGGAGAAGCGGTGAGCTGGAGTAAGGATTTTCCAGCTGTTGATTCTGTGCTGGTGAAGTTGCTGGACGCCATAGACAACATGGACAAGGAGACCTTTGAGTTCAAGTTCGGCCAAGAGCTGACCTACACCACGCTGCTGAGCGATGGGAGGATGGTGGAGCTGGTTCCCGGAGGGGCAAGTACTGTGGTCAAGCACGAGGATCGCAAGGAGTTCATACGACTGGTGCAGAAGGCCCGACTGGAGGAGAACAGAGAGCAGATCGCGGCGATGCAGGGCGGGCTGTTGAAAGTAGTGCCCCAGGCTGTGCTGGACCTCCTGACCTGGCAGGAACTGGAGAAGAAAGTGTGTGGAGACCCCGAGATCACCGTGGAGGCTCTGAAACGCCTCACACGATACGAGGATCTGGAGCAGTCTGATGTCCGAGTGCAGTATTTGTGGGAGGCACTAACTAACTTTACCAATGAGGATCGCAGCCGATTCCTGCGGTTTGTAACGGGTCGAAGTCGCCTTCCAGCCCCAATCTACATCTTCCCTGATAAACAAGGAACTGAAACCACAGATGCCCTTCCGCAGTCGTCCACCTGCTCCAGTACTCTTTATCTGCCCAACTATCCCAGTGCGAAGGTCTGTGAGGAGAAGCTGCGCTATGCTGCTTACAACTGCGTGGCGATAGACACTGACATGAGCCCCTGGGAGGAGTGACCACAAGTCTGATTCACACACATTGTGTTGGTGTACCACCTGGATTTTATATTCACCTGTTGTAGCGAATATTGTTAATATGATACCTACAAGGATTGCCAATCACCGCTGTACataataaaaatttaaaaa

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0004842 ubiquitin-protein transferase activity molecular_function

KEGG:

id description
K12233 HECTD3; E3 ubiquitin-protein ligase HECTD3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU182139 lncRNA downstream 134381 12023514 ~ 12029449 (-) True G144826
TU182132 lncRNA downstream 153459 12009918 ~ 12010371 (-) True G144821
TU181947 lncRNA downstream 591420 11571190 ~ 11572410 (-) True G144672
TU181934 lncRNA downstream 657828 11505678 ~ 11506002 (-) True G144659
TU181932 lncRNA downstream 662755 11499172 ~ 11501075 (-) True G144657
TU182205 lncRNA upstream 130349 12302579 ~ 12302836 (-) True G144877
TU182206 lncRNA upstream 130735 12302965 ~ 12303263 (-) True G144878
TU182207 lncRNA upstream 131181 12303411 ~ 12303620 (-) True G144879
TU182208 lncRNA upstream 132393 12304623 ~ 12304887 (-) True G144880
TU182217 lncRNA upstream 173911 12346141 ~ 12348328 (-) True AMCG00005022
AMCG00005010 mRNA downstream 3858 12156580 ~ 12159972 (-) True AMCG00005010
AMCG00005011 mRNA downstream 7463 12135378 ~ 12156367 (-) False AMCG00005011
AMCG00004987 mRNA downstream 144071 12011353 ~ 12019759 (-) True AMCG00004987
AMCG00004989 mRNA downstream 160626 12001111 ~ 12003204 (-) True AMCG00004989
AMCG00004990 mRNA downstream 170733 11990650 ~ 11993097 (-) True AMCG00004990
AMCG00005004 mRNA upstream 11710 12183940 ~ 12199070 (-) True AMCG00005004
AMCG00005021 mRNA upstream 112164 12284394 ~ 12288518 (-) True AMCG00005021
AMCG00005017 mRNA upstream 117680 12289910 ~ 12297782 (-) True AMCG00005017
AMCG00005020 mRNA upstream 126737 12298967 ~ 12300509 (-) True AMCG00005020
AMCG00005018 mRNA upstream 138121 12310351 ~ 12315652 (-) True AMCG00005018
TU182156 other downstream 7452 12154125 ~ 12156378 (-) False AMCG00005011
TU182157 other downstream 7452 12154125 ~ 12156378 (-) True AMCG00005011
TU181238 other downstream 3257236 8872885 ~ 8906594 (-) True G144115
TU181227 other downstream 3322842 8836360 ~ 8840988 (-) False AMCG00004894
TU181155 other downstream 3786829 8353989 ~ 8377001 (-) True G144050
TU182413 other upstream 1163979 13336209 ~ 13336746 (-) True G145046
TU182803 other upstream 2792349 14964579 ~ 14967623 (-) False AMCG00005077
TU183873 other upstream 6842317 19014547 ~ 19015663 (-) False AMCG00005214
TU184064 other upstream 7397829 19570059 ~ 19573318 (-) True G146313
TU184128 other upstream 7586002 19758232 ~ 19761446 (-) True AMCG00005240

Expression Profile