RNA id: TU182157


Basic Information

Item Value
RNA id TU182157
length 1655
RNA type TUCP
GC content 0.49
exon number 2
gene id AMCG00005011
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 12135378 ~ 12156378 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AACGCTCCTTGCTGAGCACTGCACTGTCTAGTGACCCGATCGCTTTCCCCTTGGCGCTCGGGTCTCATTCCAGTGCCAGATTAACCTCTGCTAGCAGAAGGGCTGGGCTTGAAACCTGTAGCTCCTCCCTTTCGAAGGCTgagaacaaatataaaatattcctGACCCCTGAATTGCCATCAAGCTTCGTTGGATGGATGTGCCAAAGACTGAAGCCGTGCCTAGACCCTGATGAGGAAAAGATCCGGAGCAACACCAGGTAAAGGCAAATCCACAATTATAGTTTGAATAAATGATCATCATGCATGCTGCTCTAATGCTATAAATGCAGAAAGTCTTTACAGTGATGATATCTTTGTCCAGTTCTGCTACTGAATGTAAAGTGCTGACATTTGAGACTCTGAGGAAGACTTGTCTTTTTAAGCATCAACAGAAAACCAAAACTTAAATGTTAACCTTATGTTAGGGGGATTGGTGATTCTAAACTTGTTAAATATTAGGAATTGTAGGGAAATGTATCTAATAGATGGCACAAACATCATTGTTCCAGTGGTGAAAGGATATCTGGAGCCTTTAAATAGACTATATAATTATTGCATTCTCAATTAGAGTTCGGAACTAGCCTGCCTTTCTCAGCCCCTTGATGTGGACATCCATCCTaacaatgtgtatttgtttcagaTGGAGGACACACTCGGTACCATTGAGGTAAAGGCAAAACCAGAGTTCATtgactgtatattttaatacacccattaaaattacattttaaacttactGCTGTTTGTGTTATACTTAACTTTGGGGAGTTACAATTGGGTCAGTTGGGCATCGGTACGGTCTGCTGGGAATGTGAATATCTGAAAGGACTTTGAAGTGAAACCATTAGTATTAGGCATTACAAGATCCTTTGTGTTCTAAAGAACTCCATCACCTCAAGCAAAAGACACTAAGCGACATATAATGATTGAGTCGAGTCAATGATGTACTGACCGTTGCTTCCCAGGTGTTTTGTCCTGCActccaaacccccccccccctgtttAATTTTCAGAAAACCCTTTTCACAGCACGTAAGGCAAAAAGCAGTACAGCATGGCTTCAGGAAAGACTCTGcaaatctttgtgggtgaaggaggaggggagggaatGTTGCCTAACATTAACCTAGAAGGGGTGGTGCAGAGGTGGATAGTGTGGGTGTGTTCATTGTGAGGGATGCTGGACTCTGAAACCCCACAGTAGCCTGCTGTTGCCCCGGTCAGCTGTCCGTGCTTTCATGCTCAGAGGGGGGTGGGTCAACAGTGATGGTGATCTTCGCCgtctcctctcttctcttctgcTGCTCGGAGGCCTCCAGCCGGCGCGTGTTGGCTCGGCGGGGCGTGGACTGCTGGCTGCCCTTATCGTCCTCGTCCTCGCTCTCCTCCTCGTTGATGCGTTTGGAGCAGTCCCACTCCTCGCCCTGCCAGGGGTTGGAGTTCACACTGTCTCCGCGCAGCCGCAGCATCTGCAGGCCCCGGTTGCCTCGGCCGAAGTTCTTGAGGCTGATGGCGGGCGAGGCGGCGGCGGCCAGGAAGCGGGTCACCATGGGCGTCTGCATACGTGGGGTTTTGGGGCTCGGCTCCACCGTCTGGTGCTGGGCTGGGTCCTCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU182139 lncRNA downstream 124676 12023514 ~ 12029449 (-) True G144826
TU182132 lncRNA downstream 143754 12009918 ~ 12010371 (-) True G144821
TU181947 lncRNA downstream 581715 11571190 ~ 11572410 (-) True G144672
TU181934 lncRNA downstream 648123 11505678 ~ 11506002 (-) True G144659
TU181932 lncRNA downstream 653050 11499172 ~ 11501075 (-) True G144657
TU182205 lncRNA upstream 146201 12302579 ~ 12302836 (-) True G144877
TU182206 lncRNA upstream 146587 12302965 ~ 12303263 (-) True G144878
TU182207 lncRNA upstream 147033 12303411 ~ 12303620 (-) True G144879
TU182208 lncRNA upstream 148245 12304623 ~ 12304887 (-) True G144880
TU182217 lncRNA upstream 189763 12346141 ~ 12348328 (-) True AMCG00005022
AMCG00004987 mRNA downstream 134366 12011353 ~ 12019759 (-) True AMCG00004987
AMCG00004989 mRNA downstream 150921 12001111 ~ 12003204 (-) True AMCG00004989
AMCG00004990 mRNA downstream 161028 11990650 ~ 11993097 (-) True AMCG00004990
AMCG00004988 mRNA downstream 169261 11981168 ~ 11984864 (-) True AMCG00004988
AMCG00004980 mRNA downstream 239700 11898180 ~ 11914425 (-) True AMCG00004980
AMCG00005010 mRNA upstream 202 12156580 ~ 12159972 (-) True AMCG00005010
AMCG00005009 mRNA upstream 7452 12163830 ~ 12172230 (-) True AMCG00005009
AMCG00005004 mRNA upstream 27562 12183940 ~ 12199070 (-) True AMCG00005004
AMCG00005021 mRNA upstream 128016 12284394 ~ 12288518 (-) True AMCG00005021
AMCG00005017 mRNA upstream 133532 12289910 ~ 12297782 (-) True AMCG00005017
TU181238 other downstream 3247531 8872885 ~ 8906594 (-) True G144115
TU181227 other downstream 3313137 8836360 ~ 8840988 (-) False AMCG00004894
TU181155 other downstream 3777124 8353989 ~ 8377001 (-) True G144050
TU180667 other downstream 6370941 5736809 ~ 5783184 (-) True G143659
TU180357 other downstream 8037711 4113747 ~ 4116414 (-) False AMCG00004819
TU182413 other upstream 1179831 13336209 ~ 13336746 (-) True G145046
TU182803 other upstream 2808201 14964579 ~ 14967623 (-) False AMCG00005077
TU183873 other upstream 6858169 19014547 ~ 19015663 (-) False AMCG00005214
TU184064 other upstream 7413681 19570059 ~ 19573318 (-) True G146313
TU184128 other upstream 7601854 19758232 ~ 19761446 (-) True AMCG00005240

Expression Profile