RNA id: AMCG00005012


Basic Information

Item Value
RNA id AMCG00005012
length 384
RNA type mRNA
GC content 0.49
exon number 3
gene id AMCG00005012
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 12444352 ~ 12454372 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCATTGTCTTTACACTGCTATTGTGAGAGGAAGACCTCTGTGTCAAGCAGGACTCGGACCCTTACTGCTCACACAGCCCGTGTCAGTGTCAGCAGCAGGCATGGCCTCCTTCCCCCCTCAGAGATACAACTTTTTCTTAGTCCTGGATTTTGAGGCTACGTGTGATACCAAACCCATTTACCCTCAAGAGATCATTGAATTCCCAATCTTGAAGCTCAATGGCAGGACTATGGAGATTGAATCCACTTTTCATTCCTATGTGCAGCCTGTGTATCATCCCCAGCTCACACCCTTCTGCACACAGCTGACAGGGATCATCCAGGATATGGTGGAAGGGAAGCCCACACTTCAACACACCCTGCAGGTAtgctgtgacctctga

Function

GO: NA

KEGG:

id description
K18418 ERI3, PINT1; ERI1 exoribonuclease 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU182222 lncRNA downstream 75884 12367423 ~ 12368468 (-) True G144893
TU182217 lncRNA downstream 96024 12346141 ~ 12348328 (-) True AMCG00005022
TU182208 lncRNA downstream 139465 12304623 ~ 12304887 (-) True G144880
TU182207 lncRNA downstream 140732 12303411 ~ 12303620 (-) True G144879
TU182206 lncRNA downstream 141089 12302965 ~ 12303263 (-) True G144878
TU182259 lncRNA upstream 161343 12615715 ~ 12615950 (-) True G144920
TU182287 lncRNA upstream 326201 12780573 ~ 12781170 (-) True G144941
TU182307 lncRNA upstream 358605 12812977 ~ 12815518 (-) True G144954
TU182393 lncRNA upstream 803550 13257922 ~ 13258861 (-) True G145031
TU182539 lncRNA upstream 1607349 14061721 ~ 14062111 (-) True G145129
AMCG00005022 mRNA downstream 97862 12344671 ~ 12346490 (-) False AMCG00005022
AMCG00005019 mRNA downstream 99684 12340168 ~ 12344668 (-) True AMCG00005019
AMCG00005018 mRNA downstream 128700 12310351 ~ 12315652 (-) True AMCG00005018
AMCG00005020 mRNA downstream 143843 12298967 ~ 12300509 (-) True AMCG00005020
AMCG00005017 mRNA downstream 146570 12289910 ~ 12297782 (-) True AMCG00005017
AMCG00005029 mRNA upstream 325899 12780271 ~ 12801667 (-) True AMCG00005029
AMCG00005026 mRNA upstream 364238 12818610 ~ 12842175 (-) True AMCG00005026
AMCG00005027 mRNA upstream 450093 12904465 ~ 12907715 (-) True AMCG00005027
AMCG00005025 mRNA upstream 485143 12939515 ~ 12948955 (-) True AMCG00005025
AMCG00005034 mRNA upstream 684808 13139180 ~ 13170347 (-) True AMCG00005034
TU182156 other downstream 287974 12154125 ~ 12156378 (-) False AMCG00005011
TU182157 other downstream 287974 12154125 ~ 12156378 (-) True AMCG00005011
TU181238 other downstream 3537758 8872885 ~ 8906594 (-) True G144115
TU181227 other downstream 3603364 8836360 ~ 8840988 (-) False AMCG00004894
TU181155 other downstream 4067351 8353989 ~ 8377001 (-) True G144050
TU182413 other upstream 881837 13336209 ~ 13336746 (-) True G145046
TU182803 other upstream 2510207 14964579 ~ 14967623 (-) False AMCG00005077
TU183873 other upstream 6560175 19014547 ~ 19015663 (-) False AMCG00005214
TU184064 other upstream 7115687 19570059 ~ 19573318 (-) True G146313
TU184128 other upstream 7303860 19758232 ~ 19761446 (-) True AMCG00005240

Expression Profile