RNA id: AMCG00005018


Basic Information

Item Value
RNA id AMCG00005018
length 1617
RNA type mRNA
GC content 0.60
exon number 7
gene id AMCG00005018
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 12310351 ~ 12315652 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TACATCAATGGTGGGAACCTGGAACAGTTGCTAGACAGCAACAAGCACCTGAGCTGGACAGCGCGAGTCAAGCTGGCCTCGGAGATCGCAATGGGCCTGAGTTACCTACACTCCAAGGGCATCTTCCACCGAGACCTGACCTCCAAGAACTGCTTGATCAAGTCTGAAGAAAACTGTTACACCGCCATTGTGGGAGACTTTGGTCTCGCAGAGAAGATCCCTGATCATGGTGCTGAGGGGGAGAAACTAGCCGTTGTGGGGTCTCCATTCTGGATGGCACCCGAGGTCCTTCGAGACGAGCCGTACAATGAGAAGGCTGATGTCTTCTCCTACGGCATTGTCCTGTGTGAGATAATCGCTCGGATACAGGCTGACCCTGATTACCTGCCACGTACAGAGAACTTCGGTCTAGATTATCATGCATTTCAACACATGGTGGGAGACTGTCCACCTGATTTTCTGCAGCTGGCCTTCAATTGCTGCAATATGGACCCCAAGCTCCGTCCATCCTTCCCTGAAATCGTCAAAATCCTGGAAGAGATTGTGAGCCGAGTGAAGGCCGAAGAGACGGAGCGGGAAAGACTCCACCTTAGTGCAGAGAGCATCGACAGAAAGAAAGGTCCAGGTGAGAAGGGCCAAGGAATTAAGAGGTTAAACTCGCTGGGGCTGCAGGACACCAAGATCCCCCCCAAGTCTCCGCGCCCCCGGAGGAACATCTGGCTCTCACGCAGCCAGTCCGACATCTTCTCCCGTAAGCCGGGCCGCAAGATCAACGTCCAGGACCCATACTACACCCCCAGCAGAGCGGGGACGGGGGGGCGCAAGATCAACCCCTTCAACGCCCGCGAGGACCTGAAGGGCGGGAAGATCAAGTTCTTCGACATGCCCAGCAAGTCGGTGTTCTCGCTGATGTTCGACCTACACTCCCCCCAGAGCGGCCTGGTCATGTCCCAGCCGCCGTTCCGGCACGCCGCGGGCGCGGGCGGCCCAGACTGCTGGCAGGACCCCTTTCTGCTGTGTGGCCGCCGCTGCCACTCGCTGCCCGTCTCCCCCGAGATGCCGTCCCAGGACTACTTTGGAGTGGGGGGCACGGGGCTCTCCTCCACGGTCTGTAGGTGCGACCCGGTGCCGCTGGGTAACGAGGTGCGGCAGAAGGTGGTGGGAGGCCCAGGAGGGAAGTACTCCGTGCCCGAGATCCCTCCTTACAGGCCCAGACCGGAGGAGGACGACAACTTGGCTTCCTCTCTGCCCTCCCCTGCCGATCGAAGCGAGGCCATGGACTGCTCCGACGACGAACAGTTCTACCCCGCTGTGGACCAGCTGAGCCTGCCAGCCAGCTACACGGGCACAGAGAACGGCACCTCAGACAGGAGCCTGGCCTCGGCCTGTGAAGCCATGGAGGCAGAGGACGAGGAGCAAATGCAGGGGGACAGCCGCACGCTGTCGGACACGGGCCACACGGGCGCCACCAAGTCCTCCTTCAGTCTCGCCATCTCTGTTCAGCCCGACTGCTCTGAGGAGCCCTTCAGTCTCTCCGAGGAGGACTACGGCCCCATCGTCCTGGCTCCCTGTGTCCCCTCGAGGCCGGGGGACATCCAGGCCAAGTGTGACATTTAA

Function

GO:

id name namespace
GO:0016301 kinase activity molecular_function

KEGG:

id description
K08842 TESK2; testis-specific kinase 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU182208 lncRNA downstream 5464 12304623 ~ 12304887 (-) True G144880
TU182207 lncRNA downstream 6731 12303411 ~ 12303620 (-) True G144879
TU182206 lncRNA downstream 7088 12302965 ~ 12303263 (-) True G144878
TU182205 lncRNA downstream 7515 12302579 ~ 12302836 (-) True G144877
TU182139 lncRNA downstream 280902 12023514 ~ 12029449 (-) True G144826
TU182217 lncRNA upstream 30489 12346141 ~ 12348328 (-) True AMCG00005022
TU182222 lncRNA upstream 51771 12367423 ~ 12368468 (-) True G144893
TU182259 lncRNA upstream 300063 12615715 ~ 12615950 (-) True G144920
TU182287 lncRNA upstream 464921 12780573 ~ 12781170 (-) True G144941
TU182307 lncRNA upstream 497325 12812977 ~ 12815518 (-) True G144954
AMCG00005020 mRNA downstream 9842 12298967 ~ 12300509 (-) True AMCG00005020
AMCG00005017 mRNA downstream 12569 12289910 ~ 12297782 (-) True AMCG00005017
AMCG00005021 mRNA downstream 21833 12284394 ~ 12288518 (-) True AMCG00005021
AMCG00005004 mRNA downstream 111281 12183940 ~ 12199070 (-) True AMCG00005004
AMCG00005009 mRNA downstream 138121 12163830 ~ 12172230 (-) True AMCG00005009
AMCG00005019 mRNA upstream 24516 12340168 ~ 12344668 (-) True AMCG00005019
AMCG00005022 mRNA upstream 29019 12344671 ~ 12346490 (-) False AMCG00005022
AMCG00005012 mRNA upstream 128700 12444352 ~ 12454372 (-) True AMCG00005012
AMCG00005029 mRNA upstream 464619 12780271 ~ 12801667 (-) True AMCG00005029
AMCG00005026 mRNA upstream 502958 12818610 ~ 12842175 (-) True AMCG00005026
TU182156 other downstream 153973 12154125 ~ 12156378 (-) False AMCG00005011
TU182157 other downstream 153973 12154125 ~ 12156378 (-) True AMCG00005011
TU181238 other downstream 3403757 8872885 ~ 8906594 (-) True G144115
TU181227 other downstream 3469363 8836360 ~ 8840988 (-) False AMCG00004894
TU181155 other downstream 3933350 8353989 ~ 8377001 (-) True G144050
TU182413 other upstream 1020557 13336209 ~ 13336746 (-) True G145046
TU182803 other upstream 2648927 14964579 ~ 14967623 (-) False AMCG00005077
TU183873 other upstream 6698895 19014547 ~ 19015663 (-) False AMCG00005214
TU184064 other upstream 7254407 19570059 ~ 19573318 (-) True G146313
TU184128 other upstream 7442580 19758232 ~ 19761446 (-) True AMCG00005240

Expression Profile