RNA id: AMCG00005019


Basic Information

Item Value
RNA id AMCG00005019
length 1089
RNA type mRNA
GC content 0.53
exon number 9
gene id AMCG00005019
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 12340168 ~ 12344668 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCCTCCACTAAAGAGCAGGCAGCCATCAGCAGGGTCACCATGTTCCTGCAGGAGTGGGACCAGGGGAACAAGGCCGTGCGCAGCCACATGTTGAGCACCTTTCTGAGGCAGAGTGCTGGCTGCACCGGGCCCGAGCTGGAGCTGGTGTTTGCCCAGGCTGACAGCCTTTTCCTAGCCAGGCTAACTGCATGGATGAGACTAACCCACCGTTACTTGCATGAGTTCTTGGAAGTGGGTGGTGTTTTGACCCTCCTAGAGATCCTTGGTCAGAAACAGACAGCGGAAGAGGACAAATCCGAAGCCCTGAGTCTGCTTCAGATTGTGGCCAATGCCGGGAGGAGATACAAAGAGCTCATCTGTGAAAGCTATGGTGTGCGGGCCATTGCTGAATGCTTGGCGAACTCTAAGGCAGAGGACACACAGGAGAAAGCCCGCTGCCTGCTGGAGTCCCTAGCCCAGGGTAACCCCAAATACCAGAGCCAGGTGTACAAGGGCTTGATTGCACtgctgccctgcacctcccccAAAGCCCAGCAGCTCTCCCTCCAGACACTGCGCATTGTGCAGGAAATCGTGAAAGTGGCTCATCCTAGCATTGTAGAGCCTTTGCTGAAGGTATTGAGATCTTTGCACCTTGAAGTACAGTATGAGGctATTGAACTTATTAAAGATCTCATGCACTATGAGGTCAGACTGGCTCTACTGAAAGGCTTGGTATCCTTGCTGAAACCAACAAAAGAAGGAATCAAAAACATTGAGATCCTGAATGAATTTGCCAACATGACTGAATCCTTGCCAGTGTTTGTTCAGCAAGCTGCAGCAGCCAAAGCTATACGGATGCTGGCTCAGGGGAGCCCAACGCTGTCAGAGGAGCTGCTCCCCCTGGGGCTGGTGCACCACCTGTTGTATGCAATGGGCTACCAGGACCACGCCGACAGCCAACGCCAGGCCAGTCTCGCCCTGGAGTATTTTGTCCGTACCTATCCAGTTGTGGAGGAACATGTGCATAAAGCAATGGGAGACACCCTGTTTGAACTATTTTTGttgTTGAAGAACCCGAATGATGACACATCCATCTTTCACTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU182208 lncRNA downstream 35281 12304623 ~ 12304887 (-) True G144880
TU182207 lncRNA downstream 36548 12303411 ~ 12303620 (-) True G144879
TU182206 lncRNA downstream 36905 12302965 ~ 12303263 (-) True G144878
TU182205 lncRNA downstream 37332 12302579 ~ 12302836 (-) True G144877
TU182139 lncRNA downstream 310719 12023514 ~ 12029449 (-) True G144826
TU182217 lncRNA upstream 1473 12346141 ~ 12348328 (-) True AMCG00005022
TU182222 lncRNA upstream 22755 12367423 ~ 12368468 (-) True G144893
TU182259 lncRNA upstream 271047 12615715 ~ 12615950 (-) True G144920
TU182287 lncRNA upstream 435905 12780573 ~ 12781170 (-) True G144941
TU182307 lncRNA upstream 468309 12812977 ~ 12815518 (-) True G144954
AMCG00005018 mRNA downstream 24516 12310351 ~ 12315652 (-) True AMCG00005018
AMCG00005020 mRNA downstream 39659 12298967 ~ 12300509 (-) True AMCG00005020
AMCG00005017 mRNA downstream 42386 12289910 ~ 12297782 (-) True AMCG00005017
AMCG00005021 mRNA downstream 51650 12284394 ~ 12288518 (-) True AMCG00005021
AMCG00005004 mRNA downstream 141098 12183940 ~ 12199070 (-) True AMCG00005004
AMCG00005022 mRNA upstream 3 12344671 ~ 12346490 (-) False AMCG00005022
AMCG00005012 mRNA upstream 99684 12444352 ~ 12454372 (-) True AMCG00005012
AMCG00005029 mRNA upstream 435603 12780271 ~ 12801667 (-) True AMCG00005029
AMCG00005026 mRNA upstream 473942 12818610 ~ 12842175 (-) True AMCG00005026
AMCG00005027 mRNA upstream 559797 12904465 ~ 12907715 (-) True AMCG00005027
TU182156 other downstream 183790 12154125 ~ 12156378 (-) False AMCG00005011
TU182157 other downstream 183790 12154125 ~ 12156378 (-) True AMCG00005011
TU181238 other downstream 3433574 8872885 ~ 8906594 (-) True G144115
TU181227 other downstream 3499180 8836360 ~ 8840988 (-) False AMCG00004894
TU181155 other downstream 3963167 8353989 ~ 8377001 (-) True G144050
TU182413 other upstream 991541 13336209 ~ 13336746 (-) True G145046
TU182803 other upstream 2619911 14964579 ~ 14967623 (-) False AMCG00005077
TU183873 other upstream 6669879 19014547 ~ 19015663 (-) False AMCG00005214
TU184064 other upstream 7225391 19570059 ~ 19573318 (-) True G146313
TU184128 other upstream 7413564 19758232 ~ 19761446 (-) True AMCG00005240

Expression Profile