RNA id: AMCG00005020


Basic Information

Item Value
RNA id AMCG00005020
length 774
RNA type mRNA
GC content 0.57
exon number 4
gene id AMCG00005020
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 12298967 ~ 12300509 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGAGGATGCTCCGCACCAAACTGCTCCAATTCCACCACCATCGGGAAACAGCTGTTCCGCTTCCCCAAAGATCCAGAACGAATGAGGAGATGGGACCATTTTGAGGAGAGCCAGTTTGAGGAAATCGCCAGGTCTCCTGCAGGAGGGAGGAAACTGAAGCCCAATGCCATCCCCACTCTCTTTGACGTGCCTGACCCGCCCTCGCCCATCTCTGCCAATCTCCCACCTCTAAAATTAGATCCTGCGGAGAAGGAGCAGACCTTGGTGGATCACGGCTACGCTCGCCGGCAGCCCAAAGGAACCGAAGGAGAGGACAGCGAGGCCAGCAACCAGAAGAGCGAGGAGGAGATCGCCTGCAGGCTGTGTCAGCAGTACAAGGCccagctggagcagcagcagcaacacacgGCCCGTCTGCAAAGAGAGGCTgaagagatgaagaaaaaactgaacaagCTCAACAAGATAGAGAAAGGACTGCAGATGTTCCTGTTTGATGACCAGATCCGCGCCCTGACGCTAGCGAAGCGCTCTCGCCGGGCTGTGTGGTCCCAGGACACGGTGCTGACCGCCCGGCGGATCCGGGGGGCCGTGGGGGTGAAAGGCTACGAGTTCCTCCGGGAGCTGGGGTACCCTCTCCCCTCGTACAGGACACTGTGTAACCGAATGGAACCCAAAATTATGACGCCGCCTACCATGCAAGATGAGTTGGCAGCAATCGGGCTCTGCGAAGTAGTGGACAAAATTACTCCGTTGTCCGAAATGGATTGA

Function

GO:

id name namespace
GO:0006259 DNA metabolic process biological_process

KEGG:

id description
ko04114 Oocyte meiosis
ko04218 Cellular senescence

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU182139 lncRNA downstream 269518 12023514 ~ 12029449 (-) True G144826
TU182132 lncRNA downstream 288596 12009918 ~ 12010371 (-) True G144821
TU181947 lncRNA downstream 726557 11571190 ~ 11572410 (-) True G144672
TU181934 lncRNA downstream 792965 11505678 ~ 11506002 (-) True G144659
TU181932 lncRNA downstream 797892 11499172 ~ 11501075 (-) True G144657
TU182205 lncRNA upstream 2070 12302579 ~ 12302836 (-) True G144877
TU182206 lncRNA upstream 2456 12302965 ~ 12303263 (-) True G144878
TU182207 lncRNA upstream 2902 12303411 ~ 12303620 (-) True G144879
TU182208 lncRNA upstream 4114 12304623 ~ 12304887 (-) True G144880
TU182217 lncRNA upstream 45632 12346141 ~ 12348328 (-) True AMCG00005022
AMCG00005017 mRNA downstream 1185 12289910 ~ 12297782 (-) True AMCG00005017
AMCG00005021 mRNA downstream 10449 12284394 ~ 12288518 (-) True AMCG00005021
AMCG00005004 mRNA downstream 99897 12183940 ~ 12199070 (-) True AMCG00005004
AMCG00005009 mRNA downstream 126737 12163830 ~ 12172230 (-) True AMCG00005009
AMCG00005010 mRNA downstream 138995 12156580 ~ 12159972 (-) True AMCG00005010
AMCG00005018 mRNA upstream 9842 12310351 ~ 12315652 (-) True AMCG00005018
AMCG00005019 mRNA upstream 39659 12340168 ~ 12344668 (-) True AMCG00005019
AMCG00005022 mRNA upstream 44162 12344671 ~ 12346490 (-) False AMCG00005022
AMCG00005012 mRNA upstream 143843 12444352 ~ 12454372 (-) True AMCG00005012
AMCG00005029 mRNA upstream 479762 12780271 ~ 12801667 (-) True AMCG00005029
TU182156 other downstream 142589 12154125 ~ 12156378 (-) False AMCG00005011
TU182157 other downstream 142589 12154125 ~ 12156378 (-) True AMCG00005011
TU181238 other downstream 3392373 8872885 ~ 8906594 (-) True G144115
TU181227 other downstream 3457979 8836360 ~ 8840988 (-) False AMCG00004894
TU181155 other downstream 3921966 8353989 ~ 8377001 (-) True G144050
TU182413 other upstream 1035700 13336209 ~ 13336746 (-) True G145046
TU182803 other upstream 2664070 14964579 ~ 14967623 (-) False AMCG00005077
TU183873 other upstream 6714038 19014547 ~ 19015663 (-) False AMCG00005214
TU184064 other upstream 7269550 19570059 ~ 19573318 (-) True G146313
TU184128 other upstream 7457723 19758232 ~ 19761446 (-) True AMCG00005240

Expression Profile