RNA id: AMCG00005024


Basic Information

Item Value
RNA id AMCG00005024
length 2434
RNA type mRNA
GC content 0.47
exon number 3
gene id AMCG00005024
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 12696312 ~ 12699461 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGTGGATTGGGACTCAGACTTCAGCTTTTCTCTCGTTTTTCCTGCACTTTCTCCGACCTTACTTGGAAGTGTAGCTGCCACCGCACTCTTGTGCCATGGCTCTTGCAGATGCCATGCTACCGTCCATCGCCACTTTTGCAAACCATCAGAGTTTGCAAGAAAGACAGTCAGACATTATACATAGGTGGAAAGTGGAGGCGGATGAACATATGGGATTGAGCCACGAGTTAAAACCGCACATCGAGGTGGAGTTCAGCATCGTGGAGACCCCGCCGCTGACCAAGGATGAGGACGACCTGGCCAAGTTCCTGGATCTGGAGTTCATACTGTCCAACACCATCGGCTCCGACAACGGGACCAGCTCCCTGCACCCGTCGGCCTACCCCCTGCCCGAGACCCCGGAGAGCTGCAGCACGGTGTACGACAGCGATGGCTCCCACCCCACGCCGAGCAGCTACGGCAGCGGCAGCTTCTCGGACAGCCCGACCCACAGCCTGGTGGCGGAGCTGCTGACCCCGGAGCTGACCTTCCAGAGCCCCTGTGAGATGCAGCAGGACTACAGCGTGAAGCCCGTGTTGGACAGGCGGGAGTACACCGAGCTGAGGGTGCCCACCATCGGGACTCCTATCCATTTACCGGTGGACAATCTGCCTCACCTGGGACATAAAATCAAAACCGAGAACCTGGACCAGTCGTGCATGATGGCCGGGGACTGCATGGGACAGATGTACGACCAAAAGCCCCCCATGCGGCCGctcaaccaccaccaccaccaccaccaccaccaccacccgcATCACCAGGCGGCGTTCCCAGGATTTGTGCCCCCTAGGGTGGCGCACAATGGCCAGCGAGAAGACCTGAGAAAAGACTGCCACATGGCCGAAATGAACTCTCACCACCACCACACTCACATCAGTCAGCACCCACAGTACATGGGCGCCTCGAATTACCCCTCTCAGTATGCCCACCACCAAGGTGCGCCGCAGTTTCATGGACAGTACAACGTCTTCAGGGAGCCCATGCGAGCGCACCATCCCGGCATGCACGGTATGATGCTGACCCCGCCGACATCCCCCCTGCTGGAGTTCTTCGCTCCGGCCAGTGCCCCCGAGGAGGGCAAGCCCAAGAGAGGCCGCAGGTCCTGGGCGAGAAAGCGCACAGCGACCCATAGCTGCGAGTACCCGGGCTGTGGAAAGACCTACACCAAGAGCTCTCACCTGAAAGCGCACATGCGAACCCATACAGGTGAAAAACCATATCACTGCAACTGGGATGGCTGTGGGTGGAAATTCGCCAGGTCTGATGAGCTCACTCGCCATTACAGAAAGCACACCGGGCACAGACCATTTCAGTGCCACCTGTGCGAAAGGGCGTTCTCCCGCTCCGATCACCTGGCACTGCACATGAAGAGGCACATGTAAACCGGACAATTCATACATGAACTTCTCCCCAAAAACGCAGACGTTTGAACGTTCTCGTTTAAAGGATTCGGTATTTATAGAAGAACATATTTTGGGTATGAACCATTTAAAGTTGTTTATAGATAAATCTATTTGACACTAAATTAAGACAATAtttaagaacaagaaaaaaaaaagagtcctGTCAGCCATTGTGATTTGTCTTCCATGATACATTATTTAGAGAGTATAGGAATAAGTGcatgaaagaaagagaaattaaatcaaaaatggtGGTTGGTTGTTGGacaatttaaacacacataGGGCGGGACCcagttgtatattttttgtctaaaatctgatttttgttttgttttatacattccTTTTCCTGAAGTCAGGAAAATAGAATATCTCACGATTTTGTATCATTCTCAAGTGAGGGGATTTACCTTTGAGGACTAAATTTGTCAGTTATCTTGTGCCTGGGGTTCTTTCAgttgtatattttacaatttcaatttaTGAAATATGTGCTATTTTTGAGCAACTTGAATTTCAaccagttgttttcttttttttttttttttttaagtatgtttaATGTTGAAGGTTTTTAAGTCTTCAAAGGACTGCAAAATCAGGTACCGTCAGACTGCCTTTTAATGAAGTTGTAAACTTTGTAAAAGCTTGCTAGATAAACTGTACTATAAATATACTTGAAACTTTTCCAACAAATGTTATTAACCTGTTGTTGACTATCgtatatttcttaaatgtaaCTTAAAATGTTTGGATTCAAAACAAAGCTAAATGACTCACTTTAAAAGTGCAATATATGTTGTGTATATTCTCATTTACTTCATCAGAATTGATGTCTTTCTGTAtagctgataaaaaaaaaaaatcctccaaAGAAGTGAAGTATTTCACTAAGAGAATTCTATGTTAAAgtgttttatgaataaataaaaacaaatcttacatAACTTTCAGTTTTATAATTTCCTGCTTTTCATTTCCCCAAG

Function

GO:

id name namespace
GO:0010629 negative regulation of gene expression biological_process
GO:0048785 hatching gland development biological_process
GO:0030218 erythrocyte differentiation biological_process
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0035188 hatching biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU182246 lncRNA upstream 79380 12616638 ~ 12616932 (+) True G144908
TU182120 lncRNA upstream 438443 12256288 ~ 12257869 (+) True G144811
TU182118 lncRNA upstream 454114 12239491 ~ 12242198 (+) True G144809
TU182112 lncRNA upstream 499539 12196272 ~ 12196773 (+) True G144805
TU182111 lncRNA upstream 501974 12194126 ~ 12194338 (+) True G144804
TU182289 lncRNA downstream 82709 12782170 ~ 12783644 (+) True G144942
TU182288 lncRNA downstream 82851 12782312 ~ 12783644 (+) False G144942
TU182313 lncRNA downstream 247721 12947182 ~ 12948973 (+) True G144960
TU182366 lncRNA downstream 505879 13205340 ~ 13208217 (+) True G145007
TU182378 lncRNA downstream 558256 13257717 ~ 13259076 (+) True G145017
AMCG00005023 mRNA upstream 88695 12574253 ~ 12607617 (+) True AMCG00005023
AMCG00005013 mRNA upstream 215887 12473551 ~ 12480425 (+) True AMCG00005013
AMCG00005015 mRNA upstream 327916 12348544 ~ 12368396 (+) True AMCG00005015
AMCG00005016 mRNA upstream 349482 12345526 ~ 12346830 (+) True AMCG00005016
AMCG00005014 mRNA upstream 389285 12301341 ~ 12307027 (+) True AMCG00005014
AMCG00005028 mRNA downstream 70278 12769739 ~ 12780452 (+) True AMCG00005028
AMCG00005030 mRNA downstream 103824 12803285 ~ 12810937 (+) True AMCG00005030
AMCG00005031 mRNA downstream 251042 12950503 ~ 12954868 (+) True AMCG00005031
AMCG00005032 mRNA downstream 319076 13018537 ~ 13028796 (+) True AMCG00005032
AMCG00005033 mRNA downstream 411756 13111217 ~ 13119024 (+) True AMCG00005033
TU181952 other upstream 1032944 11662681 ~ 11663368 (+) True G144677
TU180912 other upstream 4965312 7729389 ~ 7731000 (+) False AMCG00004870
TU180621 other upstream 7272191 5423703 ~ 5424121 (+) True G143626
TU180426 other upstream 8324223 4371709 ~ 4372089 (+) True G143471
TU180351 other upstream 8586657 4109022 ~ 4109655 (+) True G143404
TU182286 other downstream 81119 12780580 ~ 12781170 (+) True G144940
TU183002 other downstream 2684782 15384243 ~ 15384612 (+) False AMCG00005105
TU183561 other downstream 5065796 17765257 ~ 17771525 (+) True G145932
TU184056 other downstream 6880112 19579573 ~ 19579807 (+) True G146305
TU184341 other downstream 7482893 20182354 ~ 20184643 (+) True G146519

Expression Profile