RNA id: AMCG00005026


Basic Information

Item Value
RNA id AMCG00005026
length 618
RNA type mRNA
GC content 0.50
exon number 5
gene id AMCG00005026
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 12818610 ~ 12842175 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGATACAAACCATCTGTTGTGAATGGGAAATGTTTGGGGACGTGGAGACTGGGAGAAGACACTTTCAACAGAGCCAAGTTGCTCAATATTGGCTACACAGAGGCCATGAAGGATGCCGAGTATGACTGCTTCATATTCAGTGACGTGGATCTGATCCCCATGGATGACAGAAACCTTTATCACTGCTACGACCAGCCACGCCACTTCGCCATCGCCATGGATAAGTTTGGGTTCAGATTGCCTTATGCTGGTTATTTCGGAGGTGTATCAGGGCTGAGCaaaatccagtttctgaaaatcAACGGCTTTCCTAATGAGTACTGGGGCTGGGGAGGCGAGGATGATGACATTTATAACAGGATTACCCTCAACGGGATGAAGGTCTCTCGGCCAGATGTGCGGATCGGCCGGTACAGGATGATCAAACACGAGCGAGACAAGCACAACGAGCCCAACCCCCAGAGgttcAACAAAATTCAGAACACAAAGAACACAATGAAGCGGGACGGCATCACCTCGCTCCAGTACCGTGTTGTCCAGGTCACAAAATACCCTCTCTACACAAACGTCTCTGTGGAGATCGGCAAACCTCCCCCCCGGCCTccgagaggatag

Function

GO:

id name namespace
GO:0005975 carbohydrate metabolic process biological_process
GO:0016757 transferase activity, transferring glycosyl groups molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU182307 lncRNA downstream 3092 12812977 ~ 12815518 (-) True G144954
TU182287 lncRNA downstream 37440 12780573 ~ 12781170 (-) True G144941
TU182259 lncRNA downstream 202660 12615715 ~ 12615950 (-) True G144920
TU182222 lncRNA downstream 450142 12367423 ~ 12368468 (-) True G144893
TU182217 lncRNA downstream 470282 12346141 ~ 12348328 (-) True AMCG00005022
TU182393 lncRNA upstream 415747 13257922 ~ 13258861 (-) True G145031
TU182539 lncRNA upstream 1219546 14061721 ~ 14062111 (-) True G145129
TU182540 lncRNA upstream 1220169 14062344 ~ 14062624 (-) True G145130
TU182541 lncRNA upstream 1220690 14062865 ~ 14063123 (-) True G145131
TU182553 lncRNA upstream 1315405 14157580 ~ 14161976 (-) True G145138
AMCG00005029 mRNA downstream 16943 12780271 ~ 12801667 (-) True AMCG00005029
AMCG00005012 mRNA downstream 364238 12444352 ~ 12454372 (-) True AMCG00005012
AMCG00005022 mRNA downstream 472120 12344671 ~ 12346490 (-) False AMCG00005022
AMCG00005019 mRNA downstream 473942 12340168 ~ 12344668 (-) True AMCG00005019
AMCG00005018 mRNA downstream 502958 12310351 ~ 12315652 (-) True AMCG00005018
AMCG00005027 mRNA upstream 62290 12904465 ~ 12907715 (-) True AMCG00005027
AMCG00005025 mRNA upstream 97340 12939515 ~ 12948955 (-) True AMCG00005025
AMCG00005034 mRNA upstream 297005 13139180 ~ 13170347 (-) True AMCG00005034
AMCG00005038 mRNA upstream 341500 13183675 ~ 13218177 (-) True AMCG00005038
AMCG00005040 mRNA upstream 418040 13260215 ~ 13262868 (-) True AMCG00005040
TU182156 other downstream 662232 12154125 ~ 12156378 (-) False AMCG00005011
TU182157 other downstream 662232 12154125 ~ 12156378 (-) True AMCG00005011
TU181238 other downstream 3912016 8872885 ~ 8906594 (-) True G144115
TU181227 other downstream 3977622 8836360 ~ 8840988 (-) False AMCG00004894
TU181155 other downstream 4441609 8353989 ~ 8377001 (-) True G144050
TU182413 other upstream 494034 13336209 ~ 13336746 (-) True G145046
TU182803 other upstream 2122404 14964579 ~ 14967623 (-) False AMCG00005077
TU183873 other upstream 6172372 19014547 ~ 19015663 (-) False AMCG00005214
TU184064 other upstream 6727884 19570059 ~ 19573318 (-) True G146313
TU184128 other upstream 6916057 19758232 ~ 19761446 (-) True AMCG00005240

Expression Profile