RNA id: AMCG00005029


Basic Information

Item Value
RNA id AMCG00005029
length 783
RNA type mRNA
GC content 0.50
exon number 8
gene id AMCG00005029
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 12780271 ~ 12801667 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ggaaacaggaaacaaatgtTGCAAGGACCAGAGACTTTGCTTGAGTACACAGTGGTTACACTCAACAGATGAGGAAGGTTCATGGCTGCTCTACCTGATGATGGAGATTGCACCTTCATGGAGAGCTATGAACCTCTTCAGTCTTTGTGGAAGTTAGTGGAGGAACATGTGCCTGAATCCGAGCTTCCAGTAGTCAGGAGTGTCCTGGGAGATGCCATGGTTGACCTCAGCTTAGAGATGCACTCAGAGGTGGAAATGTGGTTGCAAATCTGGCAAGACTTAAAATCTAACCATGAAAGAGTGTCCAAGGCCTCAGCATCCCGGACTGTCCTCGCTGACCCCCCTGCCATCAAAGAGATGCTGAAGCAGGAGATACATCTACTCCTGCTGAATGTTCGAGAGAAAGCCTCTAAACAGGGCAGGGATGAAAACAAGGCTCTGTCCCTTTATAGTCCTGGCATTGTTAGCTATGTGATGGGCAGCAGTAACCCAGGCCCTCAGCTGGACAGAGCAGGAGGTGCCAGGAGTCCTCAAGGCGACGGAGATGTGCGGCCTGCTTCCCGTACCTCCACAGGCTCCAGTTTTGAGGATGAAATTGAAGCCATTAAAGACAGATTAAATGTTACCCAGATTGACGAGGTTGTAGCACATCTGAAATCTGTCCTAAAAGAAGAGTGTGATGCTCTGGGGAAGGATGTGGAGTTTCTACAGAAGTGTGTGGCGCACGAACACCAGCACAGCGCCAACCAGACTGTGAGAGAGCCCTCTGTTGCAGAACACTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU182259 lncRNA downstream 164321 12615715 ~ 12615950 (-) True G144920
TU182222 lncRNA downstream 411803 12367423 ~ 12368468 (-) True G144893
TU182217 lncRNA downstream 431943 12346141 ~ 12348328 (-) True AMCG00005022
TU182208 lncRNA downstream 475384 12304623 ~ 12304887 (-) True G144880
TU182207 lncRNA downstream 476651 12303411 ~ 12303620 (-) True G144879
TU182307 lncRNA upstream 11310 12812977 ~ 12815518 (-) True G144954
TU182393 lncRNA upstream 456255 13257922 ~ 13258861 (-) True G145031
TU182539 lncRNA upstream 1260054 14061721 ~ 14062111 (-) True G145129
TU182540 lncRNA upstream 1260677 14062344 ~ 14062624 (-) True G145130
TU182541 lncRNA upstream 1261198 14062865 ~ 14063123 (-) True G145131
AMCG00005012 mRNA downstream 325899 12444352 ~ 12454372 (-) True AMCG00005012
AMCG00005022 mRNA downstream 433781 12344671 ~ 12346490 (-) False AMCG00005022
AMCG00005019 mRNA downstream 435603 12340168 ~ 12344668 (-) True AMCG00005019
AMCG00005018 mRNA downstream 464619 12310351 ~ 12315652 (-) True AMCG00005018
AMCG00005020 mRNA downstream 479762 12298967 ~ 12300509 (-) True AMCG00005020
AMCG00005026 mRNA upstream 16943 12818610 ~ 12842175 (-) True AMCG00005026
AMCG00005027 mRNA upstream 102798 12904465 ~ 12907715 (-) True AMCG00005027
AMCG00005025 mRNA upstream 137848 12939515 ~ 12948955 (-) True AMCG00005025
AMCG00005034 mRNA upstream 337513 13139180 ~ 13170347 (-) True AMCG00005034
AMCG00005038 mRNA upstream 382008 13183675 ~ 13218177 (-) True AMCG00005038
TU182156 other downstream 623893 12154125 ~ 12156378 (-) False AMCG00005011
TU182157 other downstream 623893 12154125 ~ 12156378 (-) True AMCG00005011
TU181238 other downstream 3873677 8872885 ~ 8906594 (-) True G144115
TU181227 other downstream 3939283 8836360 ~ 8840988 (-) False AMCG00004894
TU181155 other downstream 4403270 8353989 ~ 8377001 (-) True G144050
TU182413 other upstream 534542 13336209 ~ 13336746 (-) True G145046
TU182803 other upstream 2162912 14964579 ~ 14967623 (-) False AMCG00005077
TU183873 other upstream 6212880 19014547 ~ 19015663 (-) False AMCG00005214
TU184064 other upstream 6768392 19570059 ~ 19573318 (-) True G146313
TU184128 other upstream 6956565 19758232 ~ 19761446 (-) True AMCG00005240

Expression Profile