RNA id: AMCG00005036


Basic Information

Item Value
RNA id AMCG00005036
length 641
RNA type mRNA
GC content 0.49
exon number 3
gene id AMCG00005036
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 13315390 ~ 13317852 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tatgtaactAACCTTAGGTCGTTCACCACTGCTTGCCCTGTGGTGGGATTTgctttagttttaaataaagttgtCTTCTTCAATATTTCAACATGGCGGCCTCCATGCTGGGTCGGATTGTCAGTTCGGGGTTTGGGATTTTACACTCTTCGTTTGGGAGAACGACTCAGgCCTTGAGGAGTGCCACCGCGAATGTGGAGCAGGTCAGAGGTTACTATGTTAACTGGAGGATGGTCCGAGATGTGAAGAGAAGGCAGATGGCATTTGAATATGCCAACGAGAGACTCCGGATTAATGCTATCAGGAAAAACAACATCTTACCAAAAGAGCTGCAGGAGGTTGCTGATAAAGAAATCGCCGCTCTGCCGCGGGACAGCTGCCCTGTGCGAATTCGGAACAGGTGTGTGATGACATCACGGCCACGGGGGGTGAAACGCAGGTGGCGTCTGAGTCGTATTGTTTTCCGCCACCTCGCCGACCACAATCACATGTCCGGTGTCCAGAGGGCAATGTGGTAACGGACTTCACGTGGAGGGGGTCACACAAATATTGGACTAATGGAATCGCCGGACCCCTTCCTTCTTGACTTTTCAACTGTGCTGCATCGCCTATTACtgcttcaataaatacatgtatcaaaa

Function

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0016787 hydrolase activity molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02954 RP-S14, MRPS14, rpsN; small subunit ribosomal protein S14

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU182393 lncRNA downstream 56529 13257922 ~ 13258861 (-) True G145031
TU182307 lncRNA downstream 499872 12812977 ~ 12815518 (-) True G144954
TU182287 lncRNA downstream 534220 12780573 ~ 12781170 (-) True G144941
TU182259 lncRNA downstream 699440 12615715 ~ 12615950 (-) True G144920
TU182222 lncRNA downstream 946922 12367423 ~ 12368468 (-) True G144893
TU182539 lncRNA upstream 743869 14061721 ~ 14062111 (-) True G145129
TU182540 lncRNA upstream 744492 14062344 ~ 14062624 (-) True G145130
TU182541 lncRNA upstream 745013 14062865 ~ 14063123 (-) True G145131
TU182553 lncRNA upstream 839728 14157580 ~ 14161976 (-) True G145138
TU182562 lncRNA upstream 862252 14180104 ~ 14183513 (-) True G145146
AMCG00005039 mRNA downstream 1813 13309544 ~ 13313577 (-) True AMCG00005039
AMCG00005037 mRNA downstream 8430 13301123 ~ 13306960 (-) True AMCG00005037
AMCG00005041 mRNA downstream 19971 13263243 ~ 13295419 (-) True AMCG00005041
AMCG00005040 mRNA downstream 52522 13260215 ~ 13262868 (-) True AMCG00005040
AMCG00005038 mRNA downstream 97213 13183675 ~ 13218177 (-) True AMCG00005038
AMCG00005042 mRNA upstream 49079 13366931 ~ 13367263 (-) True AMCG00005042
AMCG00005048 mRNA upstream 73857 13391709 ~ 13429286 (-) True AMCG00005048
AMCG00005045 mRNA upstream 263609 13581461 ~ 13601804 (-) True AMCG00005045
AMCG00005044 mRNA upstream 354891 13672743 ~ 13684709 (-) True AMCG00005044
AMCG00005049 mRNA upstream 387374 13705226 ~ 13710482 (-) True AMCG00005049
TU182156 other downstream 1159012 12154125 ~ 12156378 (-) False AMCG00005011
TU182157 other downstream 1159012 12154125 ~ 12156378 (-) True AMCG00005011
TU181238 other downstream 4408796 8872885 ~ 8906594 (-) True G144115
TU181227 other downstream 4474402 8836360 ~ 8840988 (-) False AMCG00004894
TU181155 other downstream 4938389 8353989 ~ 8377001 (-) True G144050
TU182413 other upstream 18357 13336209 ~ 13336746 (-) True G145046
TU182803 other upstream 1646727 14964579 ~ 14967623 (-) False AMCG00005077
TU183873 other upstream 5696695 19014547 ~ 19015663 (-) False AMCG00005214
TU184064 other upstream 6252207 19570059 ~ 19573318 (-) True G146313
TU184128 other upstream 6440380 19758232 ~ 19761446 (-) True AMCG00005240

Expression Profile