RNA id: AMCG00005039


Basic Information

Item Value
RNA id AMCG00005039
length 1337
RNA type mRNA
GC content 0.44
exon number 4
gene id AMCG00005039
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 13309544 ~ 13313577 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atcagtCAACTGCAGGCAGATTTAACTGAAATCAAGTCCTTGCTGGAGAAGGCAGAGAGAAAGCGGGTCCAGGATGTCCTCACGGTGGAGCAGAAGAAGATCGAGAGAGAGATCACTCTGAAACAGCAGCAGAAGGAGCAGCTGTTGAACAAGGACGCTGGGGAGGCGAATAGGACATCAGCAACCAAGGGATATACAGTCAAAATCAACAACTACGGTAGCTTACCTTTCACGCATCCAGCCAATCTGTTGAGATGCCAACCAGCCGTTCCATCTGGAGCTTTCTGTCCCCTGTGCCAGCTTTGCGCGTCAGACCGGTCTTTCGTAGTCCTGGTTAAAGATCTCGACGGAAAGAACTACCAAATGACTGTAAATAACCTCCTGTGTTCGATTGATGCAAAAGAGAGCTGTCGAAAGCAGcgattgatAAAGCCCAGTATGGACGAGAGCGCGGACCCCAGCGAGGGCCTCATGAGCATGCTGAAGAAGATCTACTCCGAAGGCGATGACGAAATGAAGCGCACCATCAACAAAGCCTGGGCCGAGTCCCAAGAGAAAAAAGCCAAGGGGGGCGAGATGGATTTCTGAACCAAGACATTCAATACTCCTCccattcttgttgttgttgtcgtcatTGCTGTGATTGGAGCACTCGGCCATGTCCTCTGGCGTCACGTACAGTGCAGTGCCCTGCTCCAGCGACGGGCCGAAGAAgcaagtcattttttattttaccttctgTTGCACGCTGTTTTTTGACGAATCTGTTGAAACCAATGTATCCAGTTCAgttctgtgtttaaataaattgagaagaaaaaataaacttaattgcAGGTTATTTGTAATTGGAATGGCTGTCAGGAGCGATCTGTGACGTTTGTTTCCTTGCACTGGCGACCAGACCAGCTGGGAGAAAGTAAACGAGTTGTTCAGTTTGAGTTATAAAGAGATAATCTTATAAAACTAGTGATTGATGCATGTTGACCGAGGgattaaaaccaaaatgttcTTTAGCTCATCAATACTACATGTGCACAGAACAAAAACTTAACTACAAAATGCAGGGGAAGTATGAATGTGGTACCAGGATTATTTAAGCATGTTGGAAatcaatctataaataaaagtcAAATCAAGCTTTACTGTTTACTGATTACTTCTTTACAAGCcacagaacaaaagaaagactCATGTTGTTAAAATATGCTTGTGCTATTTTTTGCTGGAAACACCAAAACGCAAACAAAAGACTGAACCAGACGataatgtatattgttatgCTTCTTGTACAACATAATAATTACAGTTGTGTGGGACTTCCACCAGAGCATGac

Function

GO: NA

KEGG:

id description
K04507 CACYBP, SIP; calcyclin binding protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU182393 lncRNA downstream 50683 13257922 ~ 13258861 (-) True G145031
TU182307 lncRNA downstream 494026 12812977 ~ 12815518 (-) True G144954
TU182287 lncRNA downstream 528374 12780573 ~ 12781170 (-) True G144941
TU182259 lncRNA downstream 693594 12615715 ~ 12615950 (-) True G144920
TU182222 lncRNA downstream 941076 12367423 ~ 12368468 (-) True G144893
TU182539 lncRNA upstream 748144 14061721 ~ 14062111 (-) True G145129
TU182540 lncRNA upstream 748767 14062344 ~ 14062624 (-) True G145130
TU182541 lncRNA upstream 749288 14062865 ~ 14063123 (-) True G145131
TU182553 lncRNA upstream 844003 14157580 ~ 14161976 (-) True G145138
TU182562 lncRNA upstream 866527 14180104 ~ 14183513 (-) True G145146
AMCG00005037 mRNA downstream 2584 13301123 ~ 13306960 (-) True AMCG00005037
AMCG00005041 mRNA downstream 14125 13263243 ~ 13295419 (-) True AMCG00005041
AMCG00005040 mRNA downstream 46676 13260215 ~ 13262868 (-) True AMCG00005040
AMCG00005038 mRNA downstream 91367 13183675 ~ 13218177 (-) True AMCG00005038
AMCG00005034 mRNA downstream 139197 13139180 ~ 13170347 (-) True AMCG00005034
AMCG00005036 mRNA upstream 1813 13315390 ~ 13317852 (-) True AMCG00005036
AMCG00005042 mRNA upstream 53354 13366931 ~ 13367263 (-) True AMCG00005042
AMCG00005048 mRNA upstream 78132 13391709 ~ 13429286 (-) True AMCG00005048
AMCG00005045 mRNA upstream 267884 13581461 ~ 13601804 (-) True AMCG00005045
AMCG00005044 mRNA upstream 359166 13672743 ~ 13684709 (-) True AMCG00005044
TU182156 other downstream 1153166 12154125 ~ 12156378 (-) False AMCG00005011
TU182157 other downstream 1153166 12154125 ~ 12156378 (-) True AMCG00005011
TU181238 other downstream 4402950 8872885 ~ 8906594 (-) True G144115
TU181227 other downstream 4468556 8836360 ~ 8840988 (-) False AMCG00004894
TU181155 other downstream 4932543 8353989 ~ 8377001 (-) True G144050
TU182413 other upstream 22632 13336209 ~ 13336746 (-) True G145046
TU182803 other upstream 1651002 14964579 ~ 14967623 (-) False AMCG00005077
TU183873 other upstream 5700970 19014547 ~ 19015663 (-) False AMCG00005214
TU184064 other upstream 6256482 19570059 ~ 19573318 (-) True G146313
TU184128 other upstream 6444655 19758232 ~ 19761446 (-) True AMCG00005240

Expression Profile