RNA id: AMCG00005043


Basic Information

Item Value
RNA id AMCG00005043
length 5047
RNA type mRNA
GC content 0.50
exon number 19
gene id AMCG00005043
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 13338099 ~ 13363552 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCCTGTAACCCACAGTCCTGGGCTTGTCAACAGGTGTCAGGAATCCTAAGGAAAGTTGGCTTCAGACGCTTGAAGCAGCAGGAGATTAACTTGTCACAGACAATCACAACGCAATGCTGCAGTTCCTCCTAATACCTCGAAGAGGCTGGACCTTCCTCCTGTTTGGGGTGCTCTTCGTTGACTTCATTGCTGCTGATGACCCAGCCATGCCTAATAATGGAGTCACCTTCAGCCATGTCTATAAGATCGACCTGCCCAAGACGTCTGACTGCAAGGTGGAGATGGACTCTCTCCCTGTACAAGACCAGATGGGAGAGCAGATGTCTCCTCTGGAGAACGTGGACGGAGACAACAACATTGTCTTCAGACACAACATCCGCCTGCAGACGCCGAAGTGCGACTGCGAGTCGTCGGAGAGCTTCAAGGAGCTGCTGTACAGGGTCAACGGCCTGGAGGAGGAAGTCACCTATCTCAAGACCCAGTGCACCCAGGGATgctgtggaggaggaggggGCTTGAACGACATGTGCAGCGGGCATGGGACCTTCAAGCAGGAGAGCTGTGGCTGCATCTGCGACGAGGGCTGGGAAGGGGAGGACTGTTCCAAGAGGGCCTGTCCAAACAACTGCAATGACAATGGCCACTGCGTGGACGGCCAGTGCGTCTGTTACGAGGGCTTTGCCGGAGTGGACTGCAGTGAGTTGCTCTGCCCCAATGAGTGCAACGACAAAGGGCGGTGTGTGGACGGTGTGTGCCAGTGCTTCAGCCACTACATGGGTGAGGACTGCAGCCAGCGGAGGTGCCCAAACGACTGCAGCGGCAACGGAGAGTGCGATGACGGTGTATGCGTGTGTCAGGAGGGATTTAACGGGAATGACTGCTCCAAAGTCATGGGTCCTAAAAGTATACGTTTGCTGAAATCCTCTGAAGAATCTCTTCTGGTGGAATGGGACCACGTGCCCGGTGCTGAGTACTATGTCCTAACGTATTACCCGGAGGGAGAGAAGGGCTCCATCCAGCAAATCAAAGtgccaaacaacaaaaactcctatCTGATAACTGGCCTAACACCTGGagttaaatatattgtagatgTGTACGCTGTGATCAAGGAGATTTTTAGTGAACCTGAAAGCCTGGAGGCCACCACTgAGCTGTCTGGGATTCAGGGTATCAGGGTGGTGACTCAGACCGAGGGCTCGCTCCAGGTGGAGTGGCAGAACCCCGCCTATGAGGTGGACTACTTCCGACTGACCTATGTCAATCCTGAGGGCCAGGAAGAGGAGGTCACAGTTCCACAGAGTTTTGAAGCCAAAACCAGTTACACCATCACAGGTGCCATTCTTGGCCTTCTCCCTGGGACTAAGTACCTAACAAAAGTCATAGCCATTAAAGGAAATTCAGAGGGGAATCCATCGTCCGTTTATGGAGAAACAGACATTGATGCTCCCACTAACCTGGTGACCCAGACGGTCACTGAGGACACTGCGACCGTGTCCTGGGATAGAGTGCAGGCACCCATTGATGGCTACATGCTCAGCTACAGCTCTGCTGACGGCCAGAGGAAGGAAATCCATGTAGGGGCAGATAGGAGCTCCTATCAGCTGACCGGCCTGAGGCCCGGAGTGGAGTACACAGTCTACATTTGGGCTGTCAAGGGAAAACGTGTCAGCAAGAAGACGTCTGCAGAGGCTGTGACAGACATTGATGCTCCCACTAACCTGGTGACCCGGACGGTAACAGAGGACACTGCGACCATGTCCTGGAACAGAGTGCAGGCGCCCATTGACGGCTACATGCTCAGCTACAGATCTGCTGACGGCCAGAGCCAGGACATCCCTGTGGGGGCAGACAGGAGCTCCTATCAGCTGACCGGCCTGAAGCCCGGAGTGGAGTACACAGTCTACATTTGGGCTGTCAAGGGAAAACACATTGATGCTCCCACTAACCTGGCGACCCGGACGGTAACAGAGGACACTGCGACCATGTCCTGGAACAAAGTGCAGGCGCCCATTGACGGCTACATGCTTAGCTACAGATCTGCTGATGGCCAGAGCCAGGACATCCCTGTGGGGGCAGACAGGAGCTCCTATCAGCTGACCGGCCTGAAGCCCGGAGTGGAGTACACAGTCTACATTTGGGCTGTCAAAGGAAAACGTGTCAGCAAGAAGACGACTGCAGAGACTGTGACAGACATTGATGCTCCCACTAACCTGGCGACCCGGACGGTGACAGAGGACACTGCGACCATGTCCTGGAACAGAGTGCAGGCGCCCATTGACGGCTACATGCTCAGCTACAGATCTGCTGACGGCCAGAGCCAGGACATCCCTGTGGGGGCAGACAGGAGCTCCTATCAGCTGACCGGCCTGAAGCCCGGAGTGGAGTACACAGTCTACATTTGGGCTGTCAAGGGAAAACGTGTCAGCAAGAAGACGACTGCAGAGGCCGTGACAGACATTGATGCTCCCACTAACCTGGCGACCCGGACGGTGACAGAGGACACTGCGACCATGTCCTGGAACAGAGTGCAGGCGCCCATTGACGGCTACATGCTCAGCTACAGATCTGCTGATGGCCAGAGCCAGGACATCCCTGTGGGGGCAGACAGGAGCTCCTATCAGCTGACCGGCCTGAAGCCCGGAGTGGAGTACACAGTCTACATTTGGGCTGTCAAAGGAAAACGTGTCAGCAAGAAAACATCTACAGAGGCTGTGACAGACATTGATGCTCCCACTAACCTGGCGACCCGGACGGTAACAGAGGACACTGCGACCATGTCCTGGAACAGAGTGCAGGCGCCCATTGACGGCTACATGCTCAGCTACAGATCTGCTGACGGCCAGAGCCAGGACATCCCTGTGGGGGCAGACAGGAGCTCTTATCAGCTGACCGGCCTGAAGCCCGGAGTGGAGTACACAGTCTACATTTGGGCTGTCAAGGGAAAACGTGTCAGCAAGAAAACATCTACAGAGGCTGTGACAGTGATTGATCCTCCCAGTAATCTGAAGGCGAGTAACGTTCAGCTGAGCGGTGGGGTGCTGAGCTGGAGGCCACCACAGGCTGCCATTGATGGATACATCCTCACATACCAGAGAGAAGACGGCAGTGGGCAGGTCATAGAAAAACAGGTGGGCTCAGGAGAGACCCGCTTTACTCTGGATGGTTTGGATATGGGCAAGAAGTACATTGTCAATCTACTGGCCTTCAGAGGAACACAGAGGAGCAAAGTCATTAAGACCACCTTCTCAACAGTTGGAGTTCGTTTCCCCTTCCCCATGGACTGCAGTCAGATCATGCAGAATGGGATCCAGTCCAATGGAGTCTACACTATCTACCTCAACAGTGACGTCTCGAAGCCGATGCAGGTTTACTGTGACATGACCACGGACGGCGGTGGCTGGATTGTCTTCCAAAGACGCAACAGTGGAAAAGTTGATTTCTTCAAGCGCTGGAAGCAATACCTCCAAGGCTTCGGGAATCTGACTGAGGAGTTCTGGTTGGGGCTGGAAAAGATATATGAGCTGACAAACACCAATACTCAGTATGAGCTGCGTGTGGATTTGAGGGCAGGCTCCGAGTCTGTGTACGCGGTCTATGACAATTTCAAACTTGCGCCAGTGAAACAGAAATTTAAGCTCACTGTTGGCAACTACAGAGGCAATGCAGGTGATGCAATGACCTACCATCAAGGCAGACCGTTCTCCACAATGGACCAGGACCACGACATTGCCCTCAGTAACTGTGCCTTGACTCATCGTGGGGCTTGGTGGTATAAGAACTGCCATTTAGCCAACCTGAATGGCAGATATGGCGATAGCAAACACAGTGTGGGAGTGAATTGGGAGCCGTGGAAGGGCCACGAGTTTTCCATCGAATTTGCTGAAATGAAAATCCGACCCCACGTCGCCTCCGATACCATCGTCCTAGGAAGGAAAAAGAGGTCTGTTGCAGgaagaaaaagcagaacacTGTAAAAAAGGAAGTAGAAGCATCAAGACTGAAATACATGTCAATGGTAGTGAGATCAGAAACCTGTCAATAATCCCCCtttgaactttaaaatgtactttaaaagtatttaatttcaacagtattttgtattctgttcatGTATATTTTCGATGTAAAAACATGCTTAATCGTCAGAATTACACACTTATATTAAACAACTAGGGGCTGAGGCAGAAGGAAATACTCATCTCGAAACACagaagacaagacaagacactCAAGCAAGGATTAAGCGCAGGACCACTGAAGCTGTAGGCAACCATGGTAGTTTGTTAAAGAGAGAATAATGCAGTAGGTGCAAACTGCACTGTCAAAACCTTTCTTTACGACACAGTTGTAACTCATAACCCTGTGCTACAATTACAAAGCGCTTAGATTATTTTCTGGACCACATggttgtaaaataacattacaatgtTCTCCTGTTGTGTTGTCTGAGATTTCTGTTAGAGCCTattcttttgtgttgttgttggccTTTTTTAATAACGACATGTAAGGTCCTTATTGTTCCTTATGTgagatctttaaaatataatcttttaatATCATGTATTTCGGAATCTTTTTGAAATATTCTAGAAACTaagaaagcagttttttttattttctgttctaaGTGGATTTTTGCACACCCACACATCACTCCCccctttcaaataaaaacatttgttttgaatgatcTTTTGAATCTATGAGAATTAAATATGTGCAGTTAAagagcaaaatacaaacaaagctTTATTGTTATCTGTTTAACACACTGAATGGATGATACGCTAGGAATCGTATAACAAAACCACACAGATCAATGCTTTTGTCATTAACGACACAAAGTTCTCGTTAAAGTACTTGCAAAATAACCTTAGCTTTTGTGAGAAAGTAACACAGGATTtcccctttttttgtttttggttgttttggttgttttgctgttgttttactgtCCACAGCCTAAAATATACAGAGTATTCCAGGTGCAGCTTAGCGTCAAATCTTTCACACCCCTCATCTTGTTGCAGTAATGTTACGG

Function

GO: NA

KEGG:

id description
K06252 TN; tenascin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU182404 lncRNA upstream 20247 13315378 ~ 13317852 (+) True G145039
TU182378 lncRNA upstream 79023 13257717 ~ 13259076 (+) True G145017
TU182366 lncRNA upstream 129882 13205340 ~ 13208217 (+) True G145007
TU182313 lncRNA upstream 389126 12947182 ~ 12948973 (+) True G144960
TU182289 lncRNA upstream 554455 12782170 ~ 12783644 (+) True G144942
TU182456 lncRNA downstream 209690 13573242 ~ 13573460 (+) True G145067
TU182538 lncRNA downstream 823049 14186601 ~ 14188315 (+) False AMCG00005060
TU182563 lncRNA downstream 840582 14204134 ~ 14204512 (+) True G145147
TU182707 lncRNA downstream 1313157 14676709 ~ 14677597 (+) True G145251
TU182730 lncRNA downstream 1414686 14778238 ~ 14791127 (+) True G145268
AMCG00005035 mRNA upstream 39417 13295774 ~ 13298682 (+) True AMCG00005035
AMCG00005033 mRNA upstream 219075 13111217 ~ 13119024 (+) True AMCG00005033
AMCG00005032 mRNA upstream 309303 13018537 ~ 13028796 (+) True AMCG00005032
AMCG00005031 mRNA upstream 383231 12950503 ~ 12954868 (+) True AMCG00005031
AMCG00005030 mRNA upstream 527162 12803285 ~ 12810937 (+) True AMCG00005030
AMCG00005057 mRNA downstream 249054 13612606 ~ 13641696 (+) True AMCG00005057
AMCG00005058 mRNA downstream 280974 13644526 ~ 13647823 (+) True AMCG00005058
AMCG00005052 mRNA downstream 558675 13922227 ~ 13941911 (+) True AMCG00005052
AMCG00005050 mRNA downstream 593150 13956702 ~ 13964422 (+) True AMCG00005050
AMCG00005051 mRNA downstream 698827 14062379 ~ 14063936 (+) True AMCG00005051
TU182286 other upstream 556929 12780580 ~ 12781170 (+) True G144940
TU181952 other upstream 1674731 11662681 ~ 11663368 (+) True G144677
TU180912 other upstream 5607099 7729389 ~ 7731000 (+) False AMCG00004870
TU180621 other upstream 7913978 5423703 ~ 5424121 (+) True G143626
TU180426 other upstream 8966010 4371709 ~ 4372089 (+) True G143471
TU183002 other downstream 2020691 15384243 ~ 15384612 (+) False AMCG00005105
TU183561 other downstream 4401705 17765257 ~ 17771525 (+) True G145932
TU184056 other downstream 6216021 19579573 ~ 19579807 (+) True G146305
TU184341 other downstream 6818802 20182354 ~ 20184643 (+) True G146519
TU184347 other downstream 6909961 20273513 ~ 20279786 (+) False AMCG00005272

Expression Profile